Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- plastid 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P17720_001 | Banana | nucleus | 58.26 | 66.9 |
| GSMUA_Achr10P... | Banana | nucleus | 49.25 | 64.31 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 51.95 | 63.14 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 50.75 | 63.06 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 46.55 | 61.26 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 49.55 | 60.22 |
| KRH17977 | Soybean | nucleus | 48.35 | 60.07 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 53.75 | 59.87 |
| CDY40894 | Canola | nucleus | 46.55 | 59.62 |
| Bra008309.1-P | Field mustard | cytosol, nucleus, plastid | 46.25 | 59.23 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 46.25 | 59.23 |
| KXG33829 | Sorghum | nucleus | 51.35 | 58.76 |
| Bra033239.1-P | Field mustard | nucleus | 49.85 | 58.25 |
| CDX90054 | Canola | nucleus | 49.85 | 58.25 |
| KRH16387 | Soybean | nucleus | 48.95 | 58.21 |
| TraesCS1A01G263700.1 | Wheat | nucleus | 51.05 | 58.02 |
| Solyc06g060230.2.1 | Tomato | nucleus | 51.35 | 57.77 |
| CDY15158 | Canola | nucleus | 49.55 | 57.69 |
| HORVU1Hr1G063740.1 | Barley | nucleus | 50.75 | 57.68 |
| AT1G01720.1 | Thale cress | nucleus | 49.85 | 57.44 |
| PGSC0003DMT400045294 | Potato | nucleus | 51.05 | 57.43 |
| Zm00001d042609_P001 | Maize | cytosol, mitochondrion, nucleus | 50.75 | 57.29 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 44.14 | 56.98 |
| KRH53247 | Soybean | nucleus | 51.05 | 56.86 |
| Os01t0884300-01 | Rice | nucleus | 51.65 | 56.77 |
| KRH64668 | Soybean | nucleus | 51.05 | 56.67 |
| Bra038663.1-P | Field mustard | nucleus | 42.34 | 56.4 |
| CDY41537 | Canola | nucleus | 42.34 | 56.4 |
| PGSC0003DMT400023917 | Potato | nucleus | 49.25 | 56.36 |
| TraesCS1D01G263800.1 | Wheat | nucleus | 50.75 | 56.33 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 44.14 | 56.11 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 50.15 | 56.04 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 50.15 | 55.85 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 49.25 | 55.78 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 43.84 | 55.73 |
| Solyc11g017470.1.1 | Tomato | nucleus | 48.65 | 55.67 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 49.85 | 55.52 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 50.15 | 55.48 |
| CDX84443 | Canola | nucleus | 41.74 | 55.16 |
| KRH63977 | Soybean | nucleus | 48.05 | 54.98 |
| KRH53959 | Soybean | nucleus | 48.65 | 54.92 |
| CDY31350 | Canola | nucleus | 43.54 | 54.72 |
| Bra029201.1-P | Field mustard | cytosol | 43.54 | 54.72 |
| Bra028645.1-P | Field mustard | nucleus | 45.65 | 54.68 |
| AT5G08790.1 | Thale cress | nucleus | 45.95 | 54.06 |
| CDY21567 | Canola | nucleus | 45.05 | 53.96 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 45.35 | 53.93 |
| CDX84050 | Canola | nucleus | 31.23 | 53.89 |
| KRH59618 | Soybean | nucleus | 48.05 | 53.69 |
| Bra009370.1-P | Field mustard | nucleus | 44.74 | 53.6 |
| CDX69919 | Canola | nucleus | 44.74 | 53.6 |
| CDX81120 | Canola | nucleus | 38.44 | 53.11 |
| GSMUA_Achr7P21770_001 | Banana | nucleus | 31.23 | 52.0 |
| Solyc04g009440.2.1 | Tomato | nucleus | 46.85 | 51.83 |
| PGSC0003DMT400082472 | Potato | nucleus | 47.15 | 51.82 |
| CDY39846 | Canola | mitochondrion | 43.54 | 49.32 |
| AT5G63790.2 | Thale cress | cytosol | 47.45 | 49.07 |
| Zm00001d038221_P001 | Maize | plastid | 49.85 | 48.97 |
| GSMUA_Achr4P02390_001 | Banana | nucleus | 37.84 | 47.73 |
| KXG22031 | Sorghum | nucleus | 48.35 | 47.21 |
| GSMUA_Achr5P07590_001 | Banana | nucleus | 38.44 | 44.14 |
| GSMUA_Achr6P32330_001 | Banana | cytosol | 35.44 | 43.7 |
| GSMUA_Achr7P21780_001 | Banana | nucleus | 37.24 | 41.61 |
| GSMUA_Achr4P10310_001 | Banana | nucleus | 34.83 | 39.59 |
| GSMUA_Achr10P... | Banana | cytosol | 34.83 | 38.16 |
| GSMUA_Achr9P19520_001 | Banana | nucleus | 36.34 | 37.12 |
| GSMUA_Achr10P... | Banana | nucleus | 33.63 | 37.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.44 | 36.09 |
| GSMUA_Achr4P02380_001 | Banana | nucleus | 35.44 | 35.33 |
| GSMUA_Achr1P08860_001 | Banana | nucleus | 36.94 | 34.26 |
| GSMUA_Achr6P32320_001 | Banana | nucleus | 34.83 | 33.62 |
| GSMUA_Achr3P18010_001 | Banana | nucleus | 35.74 | 32.34 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 23.42 | 31.2 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 24.32 | 30.92 |
| GSMUA_Achr5P19060_001 | Banana | nucleus | 22.22 | 30.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.42 | 29.89 |
| GSMUA_Achr1P02710_001 | Banana | nucleus | 24.32 | 29.78 |
| GSMUA_Achr9P04960_001 | Banana | nucleus | 35.44 | 29.72 |
| GSMUA_Achr10P... | Banana | cytosol | 23.72 | 29.59 |
| GSMUA_Achr5P17060_001 | Banana | nucleus | 24.92 | 29.43 |
| GSMUA_Achr11P... | Banana | nucleus | 23.12 | 29.39 |
| GSMUA_Achr3P14720_001 | Banana | nucleus | 24.02 | 27.68 |
| GSMUA_Achr11P... | Banana | nucleus | 26.43 | 27.67 |
| GSMUA_Achr3P00560_001 | Banana | nucleus | 23.12 | 27.6 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 23.72 | 27.53 |
| GSMUA_Achr7P04030_001 | Banana | nucleus | 23.42 | 27.37 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 24.92 | 27.04 |
| GSMUA_Achr10P... | Banana | nucleus | 26.13 | 26.61 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 24.02 | 26.32 |
| GSMUA_Achr1P18110_001 | Banana | cytosol, nucleus, plastid | 17.12 | 26.27 |
| GSMUA_Achr10P... | Banana | nucleus | 26.43 | 25.96 |
| GSMUA_Achr7P23650_001 | Banana | nucleus | 26.13 | 25.0 |
| GSMUA_Achr11P... | Banana | nucleus | 24.92 | 24.78 |
| GSMUA_Achr3P21690_001 | Banana | nucleus | 26.43 | 24.72 |
| GSMUA_Achr6P02680_001 | Banana | nucleus | 25.83 | 22.34 |
| GSMUA_Achr10P... | Banana | cytosol | 24.92 | 19.67 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr3G18990_001 |
| EnsemblPlants:GSMUA_Achr3P18990_001 | EnsemblPlants:GSMUA_Achr3T18990_001 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0SFW5 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 | PANTHER:PTHR31719:SF16 | SUPFAM:SSF101941 |
| UniParc:UPI000294CC93 | SEG:seg | : | : | : | : |
Description
NAC domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18990_001]
Coordinates
chr3:-:20366663..20368179
Molecular Weight (calculated)
37009.5 Da
IEP (calculated)
7.959
GRAVY (calculated)
-0.548
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPVSSSPSS KPFFFPVFRS YYPVAGEESE RMNGSDLVLP PGFRFHPTDE ELVVHYLLRR CAAQPIPVPI VAEVDLYKYD PWQLPGMARY GEEEWYFFSP
101: RDRKYPNGSR PNRAAGTGYW KATGADKPIG SPRPVAIKKA LVFYSGKPPK GEKTNWIMHE YRLADVDRSA RKKNQSLRFD DWVLCRIYHK KGAVGKQANP
201: DRKPAGPKSQ PRPAPQPQLK QEAVSHARAP TTDMICFDSA ESLPRLLGES SSSGHAPSYT SPDFACEREA ESQPRWADDG FSDWMIDLGI GFIDDAAAAS
301: AVAAAGDAFP PLSPAAAFRD SFQDVFVYLQ TPV
101: RDRKYPNGSR PNRAAGTGYW KATGADKPIG SPRPVAIKKA LVFYSGKPPK GEKTNWIMHE YRLADVDRSA RKKNQSLRFD DWVLCRIYHK KGAVGKQANP
201: DRKPAGPKSQ PRPAPQPQLK QEAVSHARAP TTDMICFDSA ESLPRLLGES SSSGHAPSYT SPDFACEREA ESQPRWADDG FSDWMIDLGI GFIDDAAAAS
301: AVAAAGDAFP PLSPAAAFRD SFQDVFVYLQ TPV
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.