Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 57.59 | 65.49 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 58.97 | 62.41 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 58.62 | 62.04 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 53.45 | 61.26 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 56.21 | 60.82 |
| KRH17977 | Soybean | nucleus | 55.86 | 60.45 |
| CDY40894 | Canola | nucleus | 53.1 | 59.23 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 52.76 | 58.85 |
| Bra008309.1-P | Field mustard | cytosol, nucleus, plastid | 52.76 | 58.85 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 66.9 | 58.26 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 60.0 | 58.19 |
| KXG33829 | Sorghum | nucleus | 58.28 | 58.08 |
| Bra033239.1-P | Field mustard | nucleus | 56.9 | 57.89 |
| CDX90054 | Canola | nucleus | 56.9 | 57.89 |
| AT1G01720.1 | Thale cress | nucleus | 57.24 | 57.44 |
| PGSC0003DMT400023917 | Potato | nucleus | 57.59 | 57.39 |
| CDY15158 | Canola | nucleus | 56.55 | 57.34 |
| Zm00001d042609_P001 | Maize | cytosol, mitochondrion, nucleus | 57.93 | 56.95 |
| Bra038663.1-P | Field mustard | nucleus | 48.97 | 56.8 |
| CDY41537 | Canola | nucleus | 48.97 | 56.8 |
| KRH16387 | Soybean | nucleus | 54.83 | 56.79 |
| HORVU1Hr1G063740.1 | Barley | nucleus | 57.24 | 56.66 |
| PGSC0003DMT400045294 | Potato | nucleus | 57.59 | 56.42 |
| Solyc11g017470.1.1 | Tomato | nucleus | 56.55 | 56.36 |
| CDX84443 | Canola | nucleus | 48.97 | 56.35 |
| Os01t0884300-01 | Rice | nucleus | 58.62 | 56.11 |
| TraesCS1A01G263700.1 | Wheat | nucleus | 56.55 | 55.97 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 57.59 | 55.85 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 49.66 | 55.81 |
| Solyc06g060230.2.1 | Tomato | nucleus | 56.9 | 55.74 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 57.24 | 55.52 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 56.9 | 55.37 |
| CDY31350 | Canola | nucleus | 50.34 | 55.09 |
| Bra029201.1-P | Field mustard | cytosol | 50.34 | 55.09 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 49.66 | 54.96 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 55.52 | 54.76 |
| KRH64668 | Soybean | nucleus | 56.55 | 54.67 |
| TraesCS1D01G263800.1 | Wheat | nucleus | 56.55 | 54.67 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 48.97 | 54.2 |
| KRH53247 | Soybean | nucleus | 55.86 | 54.18 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 56.21 | 54.15 |
| KRH53959 | Soybean | nucleus | 54.83 | 53.9 |
| CDX84050 | Canola | nucleus | 35.86 | 53.89 |
| KRH63977 | Soybean | nucleus | 53.79 | 53.61 |
| Bra028645.1-P | Field mustard | nucleus | 51.38 | 53.6 |
| CDY21567 | Canola | nucleus | 51.03 | 53.24 |
| AT5G08790.1 | Thale cress | nucleus | 51.72 | 53.0 |
| Bra009370.1-P | Field mustard | nucleus | 50.69 | 52.88 |
| CDX69919 | Canola | nucleus | 50.69 | 52.88 |
| GSMUA_Achr7P21770_001 | Banana | nucleus | 36.21 | 52.5 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 50.34 | 52.14 |
| KRH59618 | Soybean | nucleus | 53.45 | 52.01 |
| CDX81120 | Canola | nucleus | 43.1 | 51.87 |
| Solyc04g009440.2.1 | Tomato | nucleus | 53.1 | 51.16 |
| PGSC0003DMT400082472 | Potato | nucleus | 52.76 | 50.49 |
| CDY39846 | Canola | mitochondrion | 50.34 | 49.66 |
| Zm00001d038221_P001 | Maize | plastid | 56.21 | 48.08 |
| GSMUA_Achr4P02390_001 | Banana | nucleus | 43.45 | 47.73 |
| KXG22031 | Sorghum | nucleus | 54.83 | 46.63 |
| AT5G63790.2 | Thale cress | cytosol | 50.69 | 45.65 |
| GSMUA_Achr6P32330_001 | Banana | cytosol | 42.41 | 45.56 |
| GSMUA_Achr5P07590_001 | Banana | nucleus | 45.17 | 45.17 |
| GSMUA_Achr7P21780_001 | Banana | nucleus | 42.76 | 41.61 |
| GSMUA_Achr4P10310_001 | Banana | nucleus | 40.69 | 40.27 |
| GSMUA_Achr10P... | Banana | cytosol | 40.69 | 38.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.41 | 37.61 |
| GSMUA_Achr10P... | Banana | nucleus | 38.28 | 36.76 |
| GSMUA_Achr9P19520_001 | Banana | nucleus | 40.69 | 36.2 |
| GSMUA_Achr4P02380_001 | Banana | nucleus | 41.03 | 35.63 |
| GSMUA_Achr3P18010_001 | Banana | nucleus | 43.45 | 34.24 |
| GSMUA_Achr6P32320_001 | Banana | nucleus | 40.69 | 34.2 |
| GSMUA_Achr1P08860_001 | Banana | nucleus | 41.72 | 33.7 |
| GSMUA_Achr9P04960_001 | Banana | nucleus | 42.76 | 31.23 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 27.93 | 30.92 |
| GSMUA_Achr5P19060_001 | Banana | nucleus | 25.52 | 30.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.24 | 30.27 |
| GSMUA_Achr1P02710_001 | Banana | nucleus | 28.28 | 30.15 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 25.86 | 30.0 |
| GSMUA_Achr10P... | Banana | cytosol | 27.24 | 29.59 |
| GSMUA_Achr5P17060_001 | Banana | nucleus | 28.62 | 29.43 |
| GSMUA_Achr11P... | Banana | nucleus | 26.21 | 29.01 |
| GSMUA_Achr11P... | Banana | nucleus | 30.34 | 27.67 |
| GSMUA_Achr3P00560_001 | Banana | nucleus | 26.21 | 27.24 |
| GSMUA_Achr10P... | Banana | nucleus | 30.69 | 27.22 |
| GSMUA_Achr1P18110_001 | Banana | cytosol, nucleus, plastid | 20.34 | 27.19 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 26.9 | 27.18 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 28.62 | 27.04 |
| GSMUA_Achr7P04030_001 | Banana | nucleus | 26.55 | 27.02 |
| GSMUA_Achr3P14720_001 | Banana | nucleus | 26.9 | 26.99 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 27.59 | 26.32 |
| GSMUA_Achr10P... | Banana | nucleus | 30.34 | 25.96 |
| GSMUA_Achr11P... | Banana | nucleus | 29.66 | 25.67 |
| GSMUA_Achr7P23650_001 | Banana | nucleus | 30.69 | 25.57 |
| GSMUA_Achr3P21690_001 | Banana | nucleus | 30.69 | 25.0 |
| GSMUA_Achr6P02680_001 | Banana | nucleus | 29.31 | 22.08 |
| GSMUA_Achr10P... | Banana | cytosol | 29.66 | 20.38 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G17720_001 |
| EnsemblPlants:GSMUA_Achr6P17720_001 | EnsemblPlants:GSMUA_Achr6T17720_001 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0T7X0 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 | PANTHER:PTHR31719:SF16 | SUPFAM:SSF101941 |
| UniParc:UPI000295FAC0 | : | : | : | : | : |
Description
NAC domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17720_001]
Coordinates
chr6:+:11919436..11920521
Molecular Weight (calculated)
32511.5 Da
IEP (calculated)
6.852
GRAVY (calculated)
-0.576
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGSELALPP GFRFHPTDEE LVMHYLCRRC AAIPVPVPII ADVDLYKYDP WQLPGMALYG EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPVGS
101: PRPVAIKKAL VFYSGKPPKG EKTNWIMHEY RLADVDRSAR KNRSLRLDDW VLCRIYHKKG EVGKQANPGR RAAGPKKTRP AQPDSKQGVV SHVPAPRSAM
201: ICFDSPESLP PLTGESTDSE HVLSSSEFAC EREVESHAHD YDDWDMELGV GLIDEEDATG VGGLPAVSPA FFHDPFPDLL VHLQRPFWEI
101: PRPVAIKKAL VFYSGKPPKG EKTNWIMHEY RLADVDRSAR KNRSLRLDDW VLCRIYHKKG EVGKQANPGR RAAGPKKTRP AQPDSKQGVV SHVPAPRSAM
201: ICFDSPESLP PLTGESTDSE HVLSSSEFAC EREVESHAHD YDDWDMELGV GLIDEEDATG VGGLPAVSPA FFHDPFPDLL VHLQRPFWEI
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.