Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g060230.2.1 | Tomato | nucleus | 97.3 | 97.3 |
| PGSC0003DMT400023917 | Potato | nucleus | 71.28 | 72.51 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 72.64 | 71.91 |
| KRH17977 | Soybean | nucleus | 64.19 | 70.9 |
| KRH64668 | Soybean | nucleus | 71.62 | 70.67 |
| KRH16387 | Soybean | nucleus | 66.22 | 70.0 |
| KRH53247 | Soybean | nucleus | 69.26 | 68.56 |
| GSMUA_Achr10P... | Banana | nucleus | 57.43 | 66.67 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 56.42 | 66.01 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 59.46 | 64.23 |
| CDY40894 | Canola | nucleus | 56.42 | 64.23 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 56.42 | 64.23 |
| Bra008309.1-P | Field mustard | cytosol, nucleus, plastid | 56.42 | 64.23 |
| KXG33829 | Sorghum | nucleus | 61.49 | 62.54 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 57.09 | 61.68 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 55.74 | 61.57 |
| Zm00001d042609_P001 | Maize | cytosol, mitochondrion, nucleus | 60.47 | 60.68 |
| HORVU1Hr1G063740.1 | Barley | nucleus | 59.8 | 60.41 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 60.81 | 60.2 |
| TraesCS1A01G263700.1 | Wheat | nucleus | 59.46 | 60.07 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 60.47 | 60.07 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 60.47 | 59.87 |
| PGSC0003DMT400082472 | Potato | nucleus | 60.81 | 59.41 |
| Os01t0884300-01 | Rice | nucleus | 60.81 | 59.41 |
| TraesCS1D01G263800.1 | Wheat | nucleus | 60.14 | 59.33 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 59.46 | 58.47 |
| CDX84050 | Canola | nucleus | 37.84 | 58.03 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 56.42 | 57.59 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 57.43 | 51.05 |
| Zm00001d038221_P001 | Maize | plastid | 58.45 | 51.03 |
| KXG22031 | Sorghum | nucleus | 57.43 | 49.85 |
| Os11t0184900-02 | Rice | nucleus | 54.05 | 48.63 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 53.72 | 47.6 |
| HORVU4Hr1G017430.7 | Barley | nucleus | 53.38 | 47.59 |
| TraesCS4A01G219700.1 | Wheat | nucleus | 53.72 | 47.46 |
| TraesCS4D01G094400.1 | Wheat | nucleus | 53.38 | 47.16 |
| Zm00001d000112_P001 | Maize | nucleus | 54.05 | 44.57 |
| OQU83033 | Sorghum | nucleus | 54.05 | 41.67 |
| PGSC0003DMT400047440 | Potato | nucleus | 38.51 | 40.43 |
| PGSC0003DMT400007341 | Potato | mitochondrion | 38.18 | 39.93 |
| PGSC0003DMT400049664 | Potato | nucleus | 44.26 | 38.64 |
| PGSC0003DMT400064428 | Potato | nucleus | 42.91 | 36.18 |
| PGSC0003DMT400039670 | Potato | nucleus | 42.57 | 35.9 |
| PGSC0003DMT400049665 | Potato | nucleus | 41.55 | 34.55 |
| PGSC0003DMT400093822 | Potato | nucleus | 34.46 | 34.34 |
| PGSC0003DMT400022365 | Potato | cytosol | 26.69 | 32.24 |
| PGSC0003DMT400090327 | Potato | cytosol | 29.73 | 30.99 |
| PGSC0003DMT400003082 | Potato | nucleus | 27.7 | 29.08 |
| PGSC0003DMT400054407 | Potato | nucleus | 30.74 | 28.98 |
| PGSC0003DMT400028190 | Potato | nucleus | 28.04 | 28.72 |
| PGSC0003DMT400049124 | Potato | nucleus | 21.62 | 25.6 |
| PGSC0003DMT400047021 | Potato | nucleus | 33.11 | 24.26 |
| PGSC0003DMT400003343 | Potato | nucleus | 31.42 | 23.48 |
| PGSC0003DMT400080307 | Potato | nucleus | 30.41 | 23.26 |
| PGSC0003DMT400048237 | Potato | nucleus | 31.08 | 18.81 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:ABS89270 | ProteinID:ABS89270.1 | EMBL:EU049847 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M1BHE7 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400017567 | PGSC:PGSC0003DMG400017567 | EnsemblPlants:PGSC0003DMT400045294 | PFscan:PS51005 |
| PANTHER:PTHR31719 | PANTHER:PTHR31719:SF16 | SUPFAM:SSF101941 | UniParc:UPI000294C964 | SEG:seg | : |
Description
Nam [Source:PGSC_GENE;Acc:PGSC0003DMG400017567]
Coordinates
chr6:-:43084873..43086459
Molecular Weight (calculated)
33900.2 Da
IEP (calculated)
6.929
GRAVY (calculated)
-0.659
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAAELQLPP GFRFHPTDEE LVTHYLCRKC TSQPITVPIV AEIDLYKFDP WDLPDLALYG EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPIGI
101: PKAVGIKKAL VFYSGKAPKG EKTNWIMHEY RLADVDRSAR KNNNSLRLDD WVLCRIYNKK GSIEKNRKMN TTCYMDTVGS PEDRKPEILP PLPPPPQPQQ
201: LHNDFFYLPS DSVPKIHSDS SCSEHVLSPE FTCEREVQSE PKLTDWEKAT LDLPFNYMDA TTGATTVDNS LLGSQFQSCY QMSPLQDMFM HLHRPF
101: PKAVGIKKAL VFYSGKAPKG EKTNWIMHEY RLADVDRSAR KNNNSLRLDD WVLCRIYNKK GSIEKNRKMN TTCYMDTVGS PEDRKPEILP PLPPPPQPQQ
201: LHNDFFYLPS DSVPKIHSDS SCSEHVLSPE FTCEREVQSE PKLTDWEKAT LDLPFNYMDA TTGATTVDNS LLGSQFQSCY QMSPLQDMFM HLHRPF
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.