Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g013620.1.1 | Tomato | nucleus | 95.73 | 96.28 |
| CDY26031 | Canola | cytosol | 36.75 | 85.43 |
| CDY26032 | Canola | cytosol | 36.47 | 79.5 |
| CDX92828 | Canola | nucleus | 57.55 | 67.33 |
| CDY29836 | Canola | nucleus | 57.27 | 67.0 |
| Bra019052.1-P | Field mustard | nucleus | 56.98 | 66.67 |
| Bra026353.1-P | Field mustard | nucleus | 56.13 | 65.67 |
| CDX89253 | Canola | nucleus | 56.13 | 65.67 |
| CDY29303 | Canola | nucleus | 55.27 | 64.67 |
| CDX82432 | Canola | nucleus | 45.01 | 63.97 |
| AT4G27410.3 | Thale cress | nucleus | 56.98 | 63.69 |
| PGSC0003DMT400049665 | Potato | nucleus | 64.39 | 63.48 |
| AT3G15500.1 | Thale cress | nucleus | 52.71 | 58.36 |
| Bra001596.1-P | Field mustard | nucleus | 49.0 | 58.31 |
| CDX75833 | Canola | nucleus | 49.29 | 58.25 |
| AT1G52890.1 | Thale cress | nucleus | 52.14 | 57.73 |
| Bra021113.1-P | Field mustard | nucleus | 51.28 | 56.78 |
| CDY20109 | Canola | nucleus | 51.28 | 56.78 |
| CDY21844 | Canola | nucleus | 51.28 | 56.78 |
| CDX98560 | Canola | nucleus | 50.14 | 55.0 |
| CDX97674 | Canola | nucleus | 49.86 | 54.52 |
| Bra027238.1-P | Field mustard | nucleus | 50.43 | 53.15 |
| Bra018998.1-P | Field mustard | nucleus | 50.71 | 46.48 |
| PGSC0003DMT400045294 | Potato | nucleus | 35.9 | 42.57 |
| PGSC0003DMT400007341 | Potato | mitochondrion | 34.19 | 42.4 |
| PGSC0003DMT400023917 | Potato | nucleus | 35.04 | 42.27 |
| PGSC0003DMT400047440 | Potato | nucleus | 33.9 | 42.2 |
| PGSC0003DMT400082472 | Potato | nucleus | 33.62 | 38.94 |
| PGSC0003DMT400064428 | Potato | nucleus | 37.89 | 37.89 |
| PGSC0003DMT400049664 | Potato | nucleus | 36.18 | 37.46 |
| PGSC0003DMT400090327 | Potato | cytosol | 26.21 | 32.39 |
| PGSC0003DMT400093822 | Potato | nucleus | 27.35 | 32.32 |
| PGSC0003DMT400022365 | Potato | cytosol | 21.94 | 31.43 |
| PGSC0003DMT400054407 | Potato | nucleus | 27.64 | 30.89 |
| PGSC0003DMT400028190 | Potato | nucleus | 24.22 | 29.41 |
| PGSC0003DMT400003082 | Potato | nucleus | 22.22 | 27.66 |
| PGSC0003DMT400047021 | Potato | nucleus | 29.63 | 25.74 |
| PGSC0003DMT400080307 | Potato | nucleus | 27.64 | 25.06 |
| PGSC0003DMT400049124 | Potato | nucleus | 17.38 | 24.4 |
| PGSC0003DMT400003343 | Potato | nucleus | 27.07 | 23.99 |
| PGSC0003DMT400048237 | Potato | nucleus | 28.77 | 20.65 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:AAU12055 | ProteinID:AAU12055.1 | ProteinID:AEJ08747 | ProteinID:AEJ08747.1 |
| EMBL:AY704177 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EMBL:HM749651 | InterPro:IPR003441 |
| InterPro:IPR036093 | UniProt:M1B8M1 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400015342 |
| PGSC:PGSC0003DMG400015342 | EnsemblPlants:PGSC0003DMT400039670 | PFscan:PS51005 | PANTHER:PTHR44908 | SUPFAM:SSF101941 | UniParc:UPI000294B548 |
| SEG:seg | : | : | : | : | : |
Description
Jasmonic acid 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400015342]
Coordinates
chr12:+:822922..825609
Molecular Weight (calculated)
39803.6 Da
IEP (calculated)
8.693
GRAVY (calculated)
-0.744
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FPLQIIGEID LYKFDPWVLP SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITSQGRK VGIKKALVFY VGKAPKGSKT NWIMHEYRLF ESSRKNNGSS KLDEWVLCRI YKKNSSGPKP LMSGLHSSNE YSHGSSTSSS SQFDDMLESL
201: PEMDDRFSNL PRLNSLKTEK LNLERLDSAN FDWAILAGLK PMPELHPANQ ASGVQGQAQG NVNNHIHNHN NNNMNFLNDV YAHPTTNFRG NTKVESINLD
301: EEVESGNRNQ RIDQSSYFQQ SLNGFSQAYT NSVDQFGIQC PNQTLNLGFR Q
101: DKIITSQGRK VGIKKALVFY VGKAPKGSKT NWIMHEYRLF ESSRKNNGSS KLDEWVLCRI YKKNSSGPKP LMSGLHSSNE YSHGSSTSSS SQFDDMLESL
201: PEMDDRFSNL PRLNSLKTEK LNLERLDSAN FDWAILAGLK PMPELHPANQ ASGVQGQAQG NVNNHIHNHN NNNMNFLNDV YAHPTTNFRG NTKVESINLD
301: EEVESGNRNQ RIDQSSYFQQ SLNGFSQAYT NSVDQFGIQC PNQTLNLGFR Q
001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ
Arabidopsis Description
RD26NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JIU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.