Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400039670 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15100.1 | PGSC0003DMT400039670 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g007500.1.1 | Tomato | endoplasmic reticulum, extracellular | 86.14 | 87.73 |
| PGSC0003DMT400078399 | Potato | cytosol | 58.43 | 57.4 |
| AT1G15100.1 | Thale cress | endoplasmic reticulum, vacuole | 48.8 | 52.26 |
| CDY36528 | Canola | endoplasmic reticulum, vacuole | 45.18 | 49.02 |
| CDY68559 | Canola | endoplasmic reticulum, plasma membrane | 45.78 | 48.72 |
| CDY41070 | Canola | endoplasmic reticulum, vacuole | 42.77 | 47.97 |
| KRH35862 | Soybean | endoplasmic reticulum, extracellular | 48.8 | 47.93 |
| CDY25944 | Canola | endoplasmic reticulum, extracellular, plastid | 40.96 | 47.55 |
| Bra017465.1-P | Field mustard | endoplasmic reticulum, vacuole | 42.17 | 47.3 |
| Bra026165.1-P | Field mustard | extracellular | 38.55 | 47.06 |
| CDY68756 | Canola | endoplasmic reticulum | 42.17 | 46.36 |
| KRG90922 | Soybean | endoplasmic reticulum, extracellular | 42.17 | 46.36 |
| Bra024902.1-P | Field mustard | endoplasmic reticulum, vacuole | 41.57 | 45.7 |
| CDY17693 | Canola | endoplasmic reticulum, vacuole | 41.57 | 45.7 |
| Bra014339.1-P | Field mustard | endoplasmic reticulum, extracellular | 41.57 | 45.7 |
| CDY57513 | Canola | endoplasmic reticulum, vacuole | 40.96 | 45.03 |
| CDY37349 | Canola | endoplasmic reticulum, vacuole | 40.96 | 44.74 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 40.36 | 41.36 |
| AT2G01150.2 | Thale cress | plastid | 39.16 | 33.16 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015306 | EnsemblPlantsGene:PGSC0003DMG400005969 | EntrezGene:102586342 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF410 | PFAM:PF13639 | PFscan:PS50089 | PGSC:PGSC0003DMG400005969 | RefSeq:XP_006360432.1 | SMART:SM00184 |
| SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0002955438 | UniProt:M1A5T4 | MapMan:11.1.2.4 | : |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005969]
Coordinates
chr4:-:1871785..1872746
Molecular Weight (calculated)
18691.6 Da
IEP (calculated)
4.474
GRAVY (calculated)
0.229
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLQNQLTDV STESIPILLV TLLANCIANL RSIIFAFLQF VGVSMNPIQI EENTLYDAVG SGLAGVVMLA EQLNLNRMFS YTFDDQGDEA SGSSCVVCLN
101: RLGDGENVRK LDCKHVFHKV CFDGWLDTFN FNCPICRSSL LMVSDERVEI TRRRVVWDVI DWFSLR
101: RLGDGENVRK LDCKHVFHKV CFDGWLDTFN FNCPICRSSL LMVSDERVEI TRRRVVWDVI DWFSLR
001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH
Arabidopsis Description
RHA2AE3 ubiquitin-protein ligase RHA2A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT50]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.