Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 4
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 4
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41070 | Canola | endoplasmic reticulum, vacuole | 91.61 | 88.51 |
| CDY17693 | Canola | endoplasmic reticulum, vacuole | 83.22 | 78.81 |
| CDY68756 | Canola | endoplasmic reticulum | 81.82 | 77.48 |
| CDY37349 | Canola | endoplasmic reticulum, vacuole | 81.82 | 76.97 |
| CDY57513 | Canola | endoplasmic reticulum, vacuole | 79.72 | 75.5 |
| CDY68559 | Canola | endoplasmic reticulum, plasma membrane | 58.74 | 53.85 |
| CDY36528 | Canola | endoplasmic reticulum, vacuole | 55.94 | 52.29 |
| AT2G01150.2 | Thale cress | plastid | 69.93 | 51.02 |
| Solyc04g007500.1.1 | Tomato | endoplasmic reticulum, extracellular | 46.85 | 41.1 |
| PGSC0003DMT400015306 | Potato | endoplasmic reticulum, extracellular | 47.55 | 40.96 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 45.45 | 40.12 |
| PGSC0003DMT400078399 | Potato | cytosol | 46.85 | 39.65 |
| Solyc05g008640.1.1 | Tomato | cytosol | 45.45 | 38.01 |
| KRH35862 | Soybean | endoplasmic reticulum, extracellular | 44.06 | 37.28 |
| KRG90922 | Soybean | endoplasmic reticulum, extracellular | 37.76 | 35.76 |
Protein Annotations
| MapMan:11.1.2.4 | Gene3D:3.30.40.10 | GO:A0A078GL13 | UniProt:A0A078GL13 | EnsemblPlants:CDY25944 | ProteinID:CDY25944 |
| ProteinID:CDY25944.1 | EnsemblPlantsGene:GSBRNA2T00033452001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF410 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE2837 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC09g20430DBnaC09g20430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL13]
Coordinates
chrLK032183:-:239435..239986
Molecular Weight (calculated)
15627.9 Da
IEP (calculated)
6.763
GRAVY (calculated)
0.255
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLQGQLSDV SSDSIPLMLV ALIATLFKHV RSFFLRFSSS VVVEEDASAS SVYSGLANLA DQLKLNRLLS YLYADNASAS DCIVCLSTLK TGEEVRKLDC
101: RHVFHKQCLE GWIQHLNFNC PLCRSPLIAH GGCDSIPLVT ASH
101: RHVFHKQCLE GWIQHLNFNC PLCRSPLIAH GGCDSIPLVT ASH
001: MRCKVVYAAR TTTRTKVTKT ISKTISMGLQ GQLSDVSSDS IPLMLLALLA TFFRHVRSLL LFPSSAPVVV VTSNLSVLAD QLNLNRLFSY RYSDNAASDC
101: IVCLSKLKTG EEVRKLDCRH VFHKQCLEGW LQHLNFNCPL CRSPLLPHHH QGHGSDASIS AFPLRSTSTA SSH
101: IVCLSKLKTG EEVRKLDCRH VFHKQCLEGW LQHLNFNCPL CRSPLLPHHH QGHGSDASIS AFPLRSTSTA SSH
Arabidopsis Description
RHA2BRING-H2 finger protein 2B [Source:TAIR;Acc:AT2G01150]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.