Factsheet for Solyc05g008640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g013620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15100.1	Solyc12g013620.1.1	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078399	Potato	cytosol	83.04	84.02
Solyc04g007500.1.1	Tomato	endoplasmic reticulum, extracellular	54.39	57.06
KRH35862	Soybean	endoplasmic reticulum, extracellular	49.12	49.7
AT1G15100.1	Thale cress	endoplasmic reticulum, vacuole	43.27	47.74
CDY36528	Canola	endoplasmic reticulum, vacuole	42.11	47.06
CDY68559	Canola	endoplasmic reticulum, plasma membrane	42.69	46.79
KRG90922	Soybean	endoplasmic reticulum, extracellular	40.94	46.36
Bra026165.1-P	Field mustard	extracellular	36.26	45.59
CDY25944	Canola	endoplasmic reticulum, extracellular, plastid	38.01	45.45
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	42.69	45.06
Bra017465.1-P	Field mustard	endoplasmic reticulum, vacuole	38.6	44.59
CDY41070	Canola	endoplasmic reticulum, vacuole	38.01	43.92
Bra014339.1-P	Field mustard	endoplasmic reticulum, extracellular	38.6	43.71
CDY17693	Canola	endoplasmic reticulum, vacuole	38.6	43.71
CDY68756	Canola	endoplasmic reticulum	38.6	43.71
CDY37349	Canola	endoplasmic reticulum, vacuole	38.6	43.42
Bra024902.1-P	Field mustard	endoplasmic reticulum, vacuole	38.01	43.05
CDY57513	Canola	endoplasmic reticulum, vacuole	37.43	42.38
AT2G01150.2	Thale cress	plastid	36.26	31.63

Protein Annotations

MapMan:11.1.2.4	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4BX38	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF410	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc05g008640.1
EnsemblPlants:Solyc05g008640.1.1	UniParc:UPI00027664AE	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:2949918..2950433

Molecular Weight (calculated)

19128.8 Da

IEP (calculated)

7.813

GRAVY (calculated)

-0.088

Length

171 amino acids

Sequence
(BLAST)

001: MGLQNQLNDI SSESIPILII TLFANSLNYL RSLIYTSLQY FGISSSRFTP HQIDDSLFSE AVGSGLTGVI FLSDQLNLNR MLSYNHQQKN DEKTGAGSST
101: TCVVCLNRLG DGDRVRKLAC RHVFHTECLD GWFNTLNFNC PLCRSTSVAG ERVVRERRRV AGDLLAWFSL S

Best Arabidopsis Sequence Match ( AT1G15100.1 )
(BLAST)

001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH

Arabidopsis Description

RHA2AE3 ubiquitin-protein ligase RHA2A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT50]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.