Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15100.1 | CDY26031 | AT1G52890.1 | 12646039 |
| AT1G15100.1 | CDY26032 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36528 | Canola | endoplasmic reticulum, vacuole | 83.33 | 84.97 |
| AT1G15100.1 | Thale cress | endoplasmic reticulum, vacuole | 82.05 | 82.58 |
| CDY17693 | Canola | endoplasmic reticulum, vacuole | 57.05 | 58.94 |
| CDY25944 | Canola | endoplasmic reticulum, extracellular, plastid | 53.85 | 58.74 |
| CDY57513 | Canola | endoplasmic reticulum, vacuole | 55.77 | 57.62 |
| CDY68756 | Canola | endoplasmic reticulum | 55.13 | 56.95 |
| CDY41070 | Canola | endoplasmic reticulum, vacuole | 53.85 | 56.76 |
| CDY37349 | Canola | endoplasmic reticulum, vacuole | 55.13 | 56.58 |
| PGSC0003DMT400015306 | Potato | endoplasmic reticulum, extracellular | 48.72 | 45.78 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 47.44 | 45.68 |
| Solyc04g007500.1.1 | Tomato | endoplasmic reticulum, extracellular | 47.44 | 45.4 |
| PGSC0003DMT400078399 | Potato | cytosol | 48.08 | 44.38 |
| KRG90922 | Soybean | endoplasmic reticulum, extracellular | 42.31 | 43.71 |
| Solyc05g008640.1.1 | Tomato | cytosol | 46.79 | 42.69 |
| KRH35862 | Soybean | endoplasmic reticulum, extracellular | 46.15 | 42.6 |
Protein Annotations
| EnsemblPlants:CDY68559 | EnsemblPlantsGene:GSBRNA2T00075451001 | Gene3D:3.30.40.10 | GO:A0A078JP49 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF410 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY68559 | ProteinID:CDY68559.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE9029 |
| UniProt:A0A078JP49 | MapMan:11.1.2.4 | : | : | : | : |
Description
BnaAnng27640DBnaAnng27640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP49]
Coordinates
chrLK037553:+:3740..4538
Molecular Weight (calculated)
17004.7 Da
IEP (calculated)
7.613
GRAVY (calculated)
0.147
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLQGQLSDV SSDSIPLMLL SLLAVFLGRL RSFLHRPCDP DSNLSVDDSS SSIIASGLAN IIVLADQLSL NRLFSYRCGG EGGGSDCVVC LSKLREGEEV
101: RKLECRHVFH KRCLEGWLHC LNFTCPLCRS ALVADGCVSK TQRRVGRDLI SCLAPH
101: RKLECRHVFH KRCLEGWLHC LNFTCPLCRS ALVADGCVSK TQRRVGRDLI SCLAPH
001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH
Arabidopsis Description
RHA2AE3 ubiquitin-protein ligase RHA2A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT50]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.