Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15100.1 | CDY26031 | AT1G52890.1 | 12646039 |
| AT1G15100.1 | CDY26032 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026165.1-P | Field mustard | extracellular | 84.31 | 94.85 |
| CDY68559 | Canola | endoplasmic reticulum, plasma membrane | 84.97 | 83.33 |
| AT1G15100.1 | Thale cress | endoplasmic reticulum, vacuole | 80.39 | 79.35 |
| CDY25944 | Canola | endoplasmic reticulum, extracellular, plastid | 52.29 | 55.94 |
| CDY17693 | Canola | endoplasmic reticulum, vacuole | 54.9 | 55.63 |
| CDY41070 | Canola | endoplasmic reticulum, vacuole | 52.94 | 54.73 |
| CDY57513 | Canola | endoplasmic reticulum, vacuole | 53.59 | 54.3 |
| CDY68756 | Canola | endoplasmic reticulum | 52.94 | 53.64 |
| CDY37349 | Canola | endoplasmic reticulum, vacuole | 52.94 | 53.29 |
| Solyc04g007500.1.1 | Tomato | endoplasmic reticulum, extracellular | 49.02 | 46.01 |
| PGSC0003DMT400015306 | Potato | endoplasmic reticulum, extracellular | 49.02 | 45.18 |
| PGSC0003DMT400078399 | Potato | cytosol | 48.37 | 43.79 |
| KRG90922 | Soybean | endoplasmic reticulum, extracellular | 41.83 | 42.38 |
| Solyc05g008640.1.1 | Tomato | cytosol | 47.06 | 42.11 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 44.44 | 41.98 |
| KRH35862 | Soybean | endoplasmic reticulum, extracellular | 45.75 | 41.42 |
Protein Annotations
| EnsemblPlants:CDY36528 | EnsemblPlantsGene:GSBRNA2T00062206001 | Gene3D:3.30.40.10 | GO:A0A078HIC5 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF410 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY36528 | ProteinID:CDY36528.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EEFC64 |
| UniProt:A0A078HIC5 | MapMan:11.1.2.4 | : | : | : | : |
Description
BnaA06g09810DBnaA06g09810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIC5]
Coordinates
chrLK032378:-:29261..29722
Molecular Weight (calculated)
16584.1 Da
IEP (calculated)
6.374
GRAVY (calculated)
0.201
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLQGQLSDV SSDSLPHMLL SLLAVFLSRL RSFLLPPCDP ASNLPLDDGS IIASGLANII VLADQLSLNR LSSYRSAGEG GSDCVVCLSE LHEGEEVRKL
101: ECGHVFHKPC LEGWLHHLNF TCPLCRSALV ADGCVSRTQR RVGRDLISCF SLH
101: ECGHVFHKPC LEGWLHHLNF TCPLCRSALV ADGCVSRTQR RVGRDLISCF SLH
001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH
Arabidopsis Description
RHA2AE3 ubiquitin-protein ligase RHA2A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT50]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.