Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68756 | Canola | endoplasmic reticulum | 95.39 | 96.03 |
| CDY25944 | Canola | endoplasmic reticulum, extracellular, plastid | 76.97 | 81.82 |
| CDY57513 | Canola | endoplasmic reticulum, vacuole | 80.26 | 80.79 |
| CDY17693 | Canola | endoplasmic reticulum, vacuole | 79.61 | 80.13 |
| CDY41070 | Canola | endoplasmic reticulum, vacuole | 75.0 | 77.03 |
| CDY68559 | Canola | endoplasmic reticulum, plasma membrane | 56.58 | 55.13 |
| AT2G01150.2 | Thale cress | plastid | 68.42 | 53.06 |
| CDY36528 | Canola | endoplasmic reticulum, vacuole | 53.29 | 52.94 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 44.08 | 41.36 |
| Solyc04g007500.1.1 | Tomato | endoplasmic reticulum, extracellular | 44.08 | 41.1 |
| PGSC0003DMT400015306 | Potato | endoplasmic reticulum, extracellular | 44.74 | 40.96 |
| PGSC0003DMT400078399 | Potato | cytosol | 44.08 | 39.65 |
| Solyc05g008640.1.1 | Tomato | cytosol | 43.42 | 38.6 |
| KRH35862 | Soybean | endoplasmic reticulum, extracellular | 41.45 | 37.28 |
| KRG90922 | Soybean | endoplasmic reticulum, extracellular | 35.53 | 35.76 |
Protein Annotations
| EnsemblPlants:CDY37349 | EnsemblPlantsGene:GSBRNA2T00063887001 | Gene3D:3.30.40.10 | GO:A0A078HJ38 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF410 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY37349 | ProteinID:CDY37349.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE7930 |
| UniProt:A0A078HJ38 | MapMan:11.1.2.4 | : | : | : | : |
Description
BnaC02g33670DBnaC02g33670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ38]
Coordinates
chrLK032398:+:115148..115606
Molecular Weight (calculated)
16310.6 Da
IEP (calculated)
7.757
GRAVY (calculated)
0.199
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLQGQLSDV SSDSIPLMLV ALLATLFKHV RSFFLRFSSS SSAVEEVASP SASSGLANLA VLADQLKLNR LFSYRYADTA ANATDCIVCL STLKTGEEVR
101: KLGCRHVFHK QCLEGWLQHL NFNCPLCRSP LLGRGGGCES VSLLSEAATA SQ
101: KLGCRHVFHK QCLEGWLQHL NFNCPLCRSP LLGRGGGCES VSLLSEAATA SQ
001: MRCKVVYAAR TTTRTKVTKT ISKTISMGLQ GQLSDVSSDS IPLMLLALLA TFFRHVRSLL LFPSSAPVVV VTSNLSVLAD QLNLNRLFSY RYSDNAASDC
101: IVCLSKLKTG EEVRKLDCRH VFHKQCLEGW LQHLNFNCPL CRSPLLPHHH QGHGSDASIS AFPLRSTSTA SSH
101: IVCLSKLKTG EEVRKLDCRH VFHKQCLEGW LQHLNFNCPL CRSPLLPHHH QGHGSDASIS AFPLRSTSTA SSH
Arabidopsis Description
RHA2BRING-H2 finger protein 2B [Source:TAIR;Acc:AT2G01150]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.