Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- extracellular 4
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024902.1-P | Field mustard | endoplasmic reticulum, vacuole | 97.35 | 97.35 |
| CDY57513 | Canola | endoplasmic reticulum, vacuole | 89.4 | 89.4 |
| CDY25944 | Canola | endoplasmic reticulum, extracellular, plastid | 78.81 | 83.22 |
| CDY37349 | Canola | endoplasmic reticulum, vacuole | 80.13 | 79.61 |
| CDY68756 | Canola | endoplasmic reticulum | 79.47 | 79.47 |
| CDY41070 | Canola | endoplasmic reticulum, vacuole | 73.51 | 75.0 |
| CDY68559 | Canola | endoplasmic reticulum, plasma membrane | 58.94 | 57.05 |
| CDY36528 | Canola | endoplasmic reticulum, vacuole | 55.63 | 54.9 |
| AT2G01150.2 | Thale cress | plastid | 69.54 | 53.57 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 45.7 | 42.59 |
| Solyc04g007500.1.1 | Tomato | endoplasmic reticulum, extracellular | 45.7 | 42.33 |
| PGSC0003DMT400015306 | Potato | endoplasmic reticulum, extracellular | 45.7 | 41.57 |
| PGSC0003DMT400078399 | Potato | cytosol | 44.37 | 39.65 |
| KRH35862 | Soybean | endoplasmic reticulum, extracellular | 43.71 | 39.05 |
| Solyc05g008640.1.1 | Tomato | cytosol | 43.71 | 38.6 |
| KRG90922 | Soybean | endoplasmic reticulum, extracellular | 37.09 | 37.09 |
Protein Annotations
| MapMan:11.1.2.4 | Gene3D:3.30.40.10 | GO:A0A078FZD1 | UniProt:A0A078FZD1 | EnsemblPlants:CDY17693 | ProteinID:CDY17693 |
| ProteinID:CDY17693.1 | EnsemblPlantsGene:GSBRNA2T00001914001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF410 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDB513 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaA06g35120DBnaA06g35120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZD1]
Coordinates
chrLK032076:-:619534..620218
Molecular Weight (calculated)
16321.6 Da
IEP (calculated)
7.250
GRAVY (calculated)
0.169
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLQGQLSDV SSDSIPLMLV ALLATLFKHV RSFFLRFSAS NPHLSVVDEA AASASVTSGL ANLAVLADQL KLNRLFSYSY VDNAASDCIV CLSTLKTGEE
101: VRKLDCRHVF HKHCLEGWLQ HLNFNCPLCR STLLAHGHGE GGPSSQVTAS H
101: VRKLDCRHVF HKHCLEGWLQ HLNFNCPLCR STLLAHGHGE GGPSSQVTAS H
001: MRCKVVYAAR TTTRTKVTKT ISKTISMGLQ GQLSDVSSDS IPLMLLALLA TFFRHVRSLL LFPSSAPVVV VTSNLSVLAD QLNLNRLFSY RYSDNAASDC
101: IVCLSKLKTG EEVRKLDCRH VFHKQCLEGW LQHLNFNCPL CRSPLLPHHH QGHGSDASIS AFPLRSTSTA SSH
101: IVCLSKLKTG EEVRKLDCRH VFHKQCLEGW LQHLNFNCPL CRSPLLPHHH QGHGSDASIS AFPLRSTSTA SSH
Arabidopsis Description
RHA2BRING-H2 finger protein 2B [Source:TAIR;Acc:AT2G01150]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.