Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25944 | Canola | endoplasmic reticulum, extracellular, plastid | 51.02 | 69.93 |
| Bra017465.1-P | Field mustard | endoplasmic reticulum, vacuole | 52.55 | 69.59 |
| CDY41070 | Canola | endoplasmic reticulum, vacuole | 52.55 | 69.59 |
| CDY17693 | Canola | endoplasmic reticulum, vacuole | 53.57 | 69.54 |
| Bra024902.1-P | Field mustard | endoplasmic reticulum, vacuole | 53.06 | 68.87 |
| CDY37349 | Canola | endoplasmic reticulum, vacuole | 53.06 | 68.42 |
| CDY57513 | Canola | endoplasmic reticulum, vacuole | 52.55 | 68.21 |
| CDY68756 | Canola | endoplasmic reticulum | 52.04 | 67.55 |
| Bra014339.1-P | Field mustard | endoplasmic reticulum, extracellular | 50.51 | 65.56 |
| AT1G15100.1 | Thale cress | endoplasmic reticulum, vacuole | 45.41 | 57.42 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 32.65 | 39.51 |
| Solyc04g007500.1.1 | Tomato | endoplasmic reticulum, extracellular | 32.65 | 39.26 |
| PGSC0003DMT400015306 | Potato | endoplasmic reticulum, extracellular | 33.16 | 39.16 |
| KRG90922 | Soybean | endoplasmic reticulum, extracellular | 28.57 | 37.09 |
| PGSC0003DMT400078399 | Potato | cytosol | 31.63 | 36.69 |
| Solyc05g008640.1.1 | Tomato | cytosol | 31.63 | 36.26 |
| KRH35862 | Soybean | endoplasmic reticulum, extracellular | 30.61 | 35.5 |
Protein Annotations
| MapMan:11.1.2.4 | Gene3D:3.30.40.10 | EntrezGene:814644 | UniProt:A0A1P8B063 | ProteinID:ANM62281.1 | ArrayExpress:AT2G01150 |
| EnsemblPlantsGene:AT2G01150 | RefSeq:AT2G01150 | TAIR:AT2G01150 | RefSeq:AT2G01150-TAIR-G | EnsemblPlants:AT2G01150.2 | Unigene:At.21443 |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001324450.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF410 | Symbol:RHA2B | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0008488933 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RHA2BRING-H2 finger protein 2B [Source:TAIR;Acc:AT2G01150]
Coordinates
chr2:+:100484..101524
Molecular Weight (calculated)
21903.7 Da
IEP (calculated)
10.206
GRAVY (calculated)
-0.016
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPTTRGLCH FFFFSIHIKK KKEMRCKVVY AARTTTRTKV TKTISKTISM GLQGQLSDVS SDSIPLMLLA LLATFFRHVR SLLLFPSSAP VVVVTSNLSV
101: LADQLNLNRL FSYRYSDNAA SDCIVCLSKL KTGEEVRKLD CRHVFHKQCL EGWLQHLNFN CPLCRSPLLP HHHQGHGSDA SISAFPLRST STASSH
101: LADQLNLNRL FSYRYSDNAA SDCIVCLSKL KTGEEVRKLD CRHVFHKQCL EGWLQHLNFN CPLCRSPLLP HHHQGHGSDA SISAFPLRST STASSH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.