Factsheet for PGSC0003DMT400078399

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400039670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15100.1	PGSC0003DMT400039670	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008640.1.1	Tomato	cytosol	84.02	83.04
PGSC0003DMT400015306	Potato	endoplasmic reticulum, extracellular	57.4	58.43
AT1G15100.1	Thale cress	endoplasmic reticulum, vacuole	45.56	49.68
CDY36528	Canola	endoplasmic reticulum, vacuole	43.79	48.37
CDY68559	Canola	endoplasmic reticulum, plasma membrane	44.38	48.08
KRH35862	Soybean	endoplasmic reticulum, extracellular	47.34	47.34
Bra017465.1-P	Field mustard	endoplasmic reticulum, vacuole	41.42	47.3
Bra026165.1-P	Field mustard	extracellular	37.87	47.06
CDY25944	Canola	endoplasmic reticulum, extracellular, plastid	39.65	46.85
CDY41070	Canola	endoplasmic reticulum, vacuole	40.83	46.62
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	44.38	46.3
CDY17693	Canola	endoplasmic reticulum, vacuole	39.65	44.37
KRG90922	Soybean	endoplasmic reticulum, extracellular	39.65	44.37
CDY37349	Canola	endoplasmic reticulum, vacuole	39.65	44.08
CDY68756	Canola	endoplasmic reticulum	39.05	43.71
CDY57513	Canola	endoplasmic reticulum, vacuole	39.05	43.71
Bra024902.1-P	Field mustard	endoplasmic reticulum, vacuole	39.05	43.71
Bra014339.1-P	Field mustard	endoplasmic reticulum, extracellular	38.46	43.05
AT2G01150.2	Thale cress	plastid	36.69	31.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400078399	EnsemblPlantsGene:PGSC0003DMG400030521	EntrezGene:102594525	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF410	PFAM:PF13639	PFscan:PS50089
PGSC:PGSC0003DMG400030521	RefSeq:XP_006344186.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296DE14
UniProt:M1D014	MapMan:11.1.2.4	:	:	:	:

Description

E3 ubiquitin-protein ligase RHA2A [Source:PGSC_GENE;Acc:PGSC0003DMG400030521]

Coordinates

chr5:-:3667660..3668383

Molecular Weight (calculated)

18979.8 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.005

Length

169 amino acids

Sequence
(BLAST)

001: MGLQNQLSDI STESIPILMI TLFANSLNYL RSLIYTFLQF LGISSSRFTP HQIDDSFCEA VGSGLTGVIF LADQLNLNRL LSYHHQQQQD EKTGSGSSTC
101: VVCLNRLGDG DRVRKLACRH VFHMECLDGW FNTLNFNCPL CRSTSVSGER VVRARRRVAG DLLAWFSLN

Best Arabidopsis Sequence Match ( AT1G15100.1 )
(BLAST)

001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH

Arabidopsis Description

RHA2AE3 ubiquitin-protein ligase RHA2A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT50]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.