CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014339.1-P	Field mustard	endoplasmic reticulum, extracellular	96.69	96.69
CDY37349	Canola	endoplasmic reticulum, vacuole	96.03	95.39
CDY25944	Canola	endoplasmic reticulum, extracellular, plastid	77.48	81.82
CDY17693	Canola	endoplasmic reticulum, vacuole	79.47	79.47
CDY57513	Canola	endoplasmic reticulum, vacuole	79.47	79.47
CDY41070	Canola	endoplasmic reticulum, vacuole	75.5	77.03
CDY68559	Canola	endoplasmic reticulum, plasma membrane	56.95	55.13
CDY36528	Canola	endoplasmic reticulum, vacuole	53.64	52.94
AT2G01150.2	Thale cress	plastid	67.55	52.04
Solyc04g007500.1.1	Tomato	endoplasmic reticulum, extracellular	46.36	42.94
PGSC0003DMT400015306	Potato	endoplasmic reticulum, extracellular	46.36	42.17
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	44.37	41.36
PGSC0003DMT400078399	Potato	cytosol	43.71	39.05
Solyc05g008640.1.1	Tomato	cytosol	43.71	38.6
KRH35862	Soybean	endoplasmic reticulum, extracellular	42.38	37.87
KRG90922	Soybean	endoplasmic reticulum, extracellular	35.76	35.76

Protein Annotations

EnsemblPlants:CDY68756	EnsemblPlantsGene:GSBRNA2T00077591001	Gene3D:3.30.40.10	GO:A0A078JT24	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF410	PFAM:PF13639	PFscan:PS50089
ProteinID:CDY68756	ProteinID:CDY68756.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EEF6A3
UniProt:A0A078JT24	MapMan:11.1.2.4	:	:	:	:

Description

BnaA02g36840DBnaA02g36840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT24]

Coordinates

chrLK037900:+:338..922

Molecular Weight (calculated)

16238.5 Da

IEP (calculated)

7.341

GRAVY (calculated)

0.172

Length

151 amino acids

Sequence
(BLAST)

001: MGLQGQLSDV SSDSIPLMLV ALLATLFKHV RSFFLRFSSS SSAVEEVASP SVSSGLANLA VLADQLKLNR IFSYRYADTA AASDCIVCLS TLKSGEEVRK
101: LGCRHVFHKQ CLEGWLQHLN FNCPLCRSPL PGRGGGCESV SLLSEEATAS Q

Best Arabidopsis Sequence Match ( AT1G15100.1 )
(BLAST)

001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH

Arabidopsis Description

RHA2AE3 ubiquitin-protein ligase RHA2A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT50]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.