Factsheet for GSMUA_Achr10P20150_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G15100.1	Thale cress	endoplasmic reticulum, vacuole	46.3	48.39
CDY68559	Canola	endoplasmic reticulum, plasma membrane	45.68	47.44
Bra024902.1-P	Field mustard	endoplasmic reticulum, vacuole	42.59	45.7
CDY17693	Canola	endoplasmic reticulum, vacuole	42.59	45.7
CDY25944	Canola	endoplasmic reticulum, extracellular, plastid	40.12	45.45
KRH35862	Soybean	endoplasmic reticulum, extracellular	46.91	44.97
CDY36528	Canola	endoplasmic reticulum, vacuole	41.98	44.44
PGSC0003DMT400078399	Potato	cytosol	46.3	44.38
CDY68756	Canola	endoplasmic reticulum	41.36	44.37
CDY37349	Canola	endoplasmic reticulum, vacuole	41.36	44.08
CDY41070	Canola	endoplasmic reticulum, vacuole	40.12	43.92
Bra017465.1-P	Field mustard	endoplasmic reticulum, vacuole	40.12	43.92
CDY57513	Canola	endoplasmic reticulum, vacuole	40.74	43.71
KRG90922	Soybean	endoplasmic reticulum, extracellular	40.74	43.71
Bra014339.1-P	Field mustard	endoplasmic reticulum, extracellular	40.74	43.71
Bra026165.1-P	Field mustard	extracellular	36.42	43.38
Solyc05g008640.1.1	Tomato	cytosol	45.06	42.69
PGSC0003DMT400015306	Potato	endoplasmic reticulum, extracellular	41.36	40.36
Solyc04g007500.1.1	Tomato	endoplasmic reticulum, extracellular	40.12	39.88
AT2G01150.2	Thale cress	plastid	39.51	32.65

Protein Annotations

EnsemblPlants:GSMUA_Achr10P20150_001	EnsemblPlants:GSMUA_Achr10T20150_001	EnsemblPlantsGene:GSMUA_Achr10G20150_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF410	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000294BA96	UniProt:M0RJU0	MapMan:11.1.2.4	:	:

Description

Putative E3 ubiquitin-protein ligase RHA2A [Source:GMGC_GENE;Acc:GSMUA_Achr10G20150_001]

Coordinates

chr10:+:26263178..26263666

Molecular Weight (calculated)

17098.5 Da

IEP (calculated)

6.585

GRAVY (calculated)

0.235

Length

162 amino acids

Sequence
(BLAST)

001: MGLSNHLHDV SGDSIPLLLL AAAAASIAYL RSLLLRLLPL SLSSSPADAD ADPEPSVGSG LAGLVVLADH LTSNRSFAFA SRSSGGEGRR AECAVCLCGL
101: ADGDRVRRLP CCHVFHGECL EGWFHHLNLT CPLCRSELAA PEVRAAADRR IGAELVAWLS HH

Best Arabidopsis Sequence Match ( AT1G15100.1 )
(BLAST)

001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH

Arabidopsis Description

RHA2AE3 ubiquitin-protein ligase RHA2A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT50]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.