Factsheet for PGSC0003DMT400048237

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006840.1.1	Tomato	nucleus	77.1	78.05
VIT_06s0004g02340.t01	Wine grape	nucleus	13.09	35.56
PGSC0003DMT400007341	Potato	mitochondrion	20.04	34.63
PGSC0003DMT400047440	Potato	nucleus	19.63	34.04
PGSC0003DMT400023917	Potato	nucleus	19.43	32.65
PGSC0003DMT400045294	Potato	nucleus	18.81	31.08
PGSC0003DMT400049664	Potato	nucleus	21.47	30.97
PGSC0003DMT400049665	Potato	nucleus	21.88	30.06
PGSC0003DMT400064428	Potato	nucleus	21.47	29.91
PGSC0003DMT400022365	Potato	cytosol	14.93	29.8
PGSC0003DMT400093822	Potato	nucleus	18.0	29.63
PGSC0003DMT400082472	Potato	nucleus	18.0	29.04
PGSC0003DMT400039670	Potato	nucleus	20.65	28.77
PGSC0003DMT400090327	Potato	cytosol	16.56	28.52
PGSC0003DMT400054407	Potato	nucleus	18.2	28.34
PGSC0003DMT400003082	Potato	nucleus	15.34	26.6
PGSC0003DMT400028190	Potato	nucleus	14.52	24.57
Os05t0415400-01	Rice	extracellular, nucleus, plastid	14.72	23.23
PGSC0003DMT400049124	Potato	nucleus	11.45	22.4
PGSC0003DMT400080307	Potato	nucleus	17.59	22.22
PGSC0003DMT400003343	Potato	nucleus	17.38	21.46
PGSC0003DMT400047021	Potato	nucleus	17.38	21.04
Os02t0745300-00	Rice	plastid	2.25	6.67

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:M1BM46	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400018739
PGSC:PGSC0003DMG400018739	EnsemblPlants:PGSC0003DMT400048237	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF101	SUPFAM:SSF101941
UniParc:UPI0002957289	SEG:seg	:	:	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018739]

Coordinates

chr7:+:2599091..2601519

Molecular Weight (calculated)

55984.9 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.974

Length

489 amino acids

Sequence
(BLAST)

001: MENHNTSPTN NVSKDNLISA NHINELPISA VFSNKNSNGD QIMSTEDVEA LMKKFPPGFR FYPTDYELIK YYLERKLANL PLQPNKIYEM NIYKYDPDTI
101: AAYLKPTTAE NVWYVFTPRD RKYPNGERPD RCTGNGYWKA TGADISINDK NSKIGSRRAL VYHIGKPPKG KKTDWIMHEY MIPKIPIPNS STPRNPKLDE
201: WVLCRFYNKN DVITTRSTRR KRKRGDDDPF IDEVHEDSTG NDLTTNFNNN DNHAIMFPED QDSMRNDLTN FNNNYNHAMS LHPQVHTGLS TLPQYSYMPI
301: MSNYQNYVSD HYNNYTDGAP LPLMIKPTAT NNSIEHDYTM NNEGFGGDYG EYLEHDQHYA FDQYIVDNYE SQYNTNNFVN GETTTSNNFV NCETTNSNNF
401: INGETTTSNN FVNCETTNSN NFINGETTTS NNFVNCETTN SNNFINGETT TSNNFVNCET TNSNNFINGE TTTSNNFVNG ETSTSKKDC

Best Arabidopsis Sequence Match ( AT1G52890.1 )
(BLAST)

001: MGIQETDPLT QLSLPPGFRF YPTDEELMVQ YLCRKAAGYD FSLQLIAEID LYKFDPWVLP NKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIISTEGQR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKQV YDNGIANARE FSNNGTSSTT SSSSHFEDVL
201: DSFHQEIDNR NFQFSNPNRI SSLRPDLTEQ KTGFHGLADT SNFDWASFAG NVEHNNSVPE LGMSHVVPNL EYNCGYLKTE EEVESSHGFN NSGELAQKGY
301: GVDSFGYSGQ VGGFGFM

Arabidopsis Description

NAC019NAC domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9C932]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.