Factsheet for PGSC0003DMT400049665

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063410.2.1	Tomato	nucleus	94.1	94.1
VIT_19s0014g03290.t01	Wine grape	nucleus	66.01	70.57
PGSC0003DMT400039670	Potato	nucleus	63.48	64.39
KRH22137	Soybean	nucleus	61.52	63.85
KRH27201	Soybean	nucleus	61.8	63.77
PGSC0003DMT400007341	Potato	mitochondrion	34.55	43.46
PGSC0003DMT400047440	Potato	nucleus	34.27	43.26
PGSC0003DMT400023917	Potato	nucleus	34.55	42.27
PGSC0003DMT400045294	Potato	nucleus	34.55	41.55
PGSC0003DMT400064428	Potato	nucleus	39.61	40.17
PGSC0003DMT400082472	Potato	nucleus	33.99	39.93
PGSC0003DMT400049664	Potato	nucleus	37.64	39.53
PGSC0003DMT400093822	Potato	nucleus	26.4	31.65
PGSC0003DMT400022365	Potato	cytosol	21.63	31.43
PGSC0003DMT400090327	Potato	cytosol	25.0	31.34
PGSC0003DMT400054407	Potato	nucleus	26.4	29.94
PGSC0003DMT400028190	Potato	nucleus	24.16	29.76
PGSC0003DMT400003082	Potato	nucleus	22.19	28.01
PGSC0003DMT400080307	Potato	nucleus	28.37	26.1
PGSC0003DMT400047021	Potato	nucleus	28.93	25.5
PGSC0003DMT400003343	Potato	nucleus	26.4	23.74
PGSC0003DMT400049124	Potato	nucleus	16.57	23.6
PGSC0003DMT400048237	Potato	nucleus	30.06	21.88

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:M1BP49	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400019294
PGSC:PGSC0003DMG400019294	EnsemblPlants:PGSC0003DMT400049665	PFscan:PS51005	PANTHER:PTHR44908	SUPFAM:SSF101941	UniParc:UPI000294CE37
SEG:seg	:	:	:	:	:

Description

Jasmonic acid 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400019294]

Coordinates

chr7:+:53565515..53567162

Molecular Weight (calculated)

40000.7 Da

IEP (calculated)

7.128

GRAVY (calculated)

-0.616

Length

356 amino acids

Sequence
(BLAST)

001: MGVQEMDPLT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITTEGRK VGIKKALVFY IGKAPKGTKT NWIMHEYRLS EPTTKSGSSR LDDWVLCRIY KKNSGGQKPS CSDLQSKDIN HGSSSSSSSQ FDDMLESLPA
201: IEDRYFSLPK VNSIRNFQQD EKLNLQQLGS GNFDWATIAG LNSFPELASG NQVPAPGNQT PVLMNTNQYH NHNNNLNNFN EFFANSTALN FHSEVKFEGG
301: VDQEVESSVR AQRLNSVNPG FFQENSTGFP SSYTNSVPDP FGIRYPTQTV NMGFTG

Best Arabidopsis Sequence Match ( AT4G27410.2 )
(BLAST)

001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ

Arabidopsis Description

RD26NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JIU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.