Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0370g00040.t01 | |
| VIT_18s0001g10260.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52890.1 | VIT_00s0370g00040.t01 | AT4G21670.1 | 18541146 |
| AT1G52890.1 | VIT_18s0001g10260.t01 | AT5G42940.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26031 | Canola | cytosol | 39.64 | 87.42 |
| CDY26032 | Canola | cytosol | 39.34 | 81.37 |
| KRH22137 | Soybean | nucleus | 70.27 | 68.22 |
| KRH27201 | Soybean | nucleus | 70.27 | 67.83 |
| CDX82432 | Canola | nucleus | 49.55 | 66.8 |
| PGSC0003DMT400049665 | Potato | nucleus | 70.57 | 66.01 |
| CDY29303 | Canola | nucleus | 58.86 | 65.33 |
| CDY29836 | Canola | nucleus | 58.56 | 65.0 |
| CDX92828 | Canola | nucleus | 58.56 | 65.0 |
| Solyc07g063410.2.1 | Tomato | nucleus | 69.07 | 64.61 |
| Bra019052.1-P | Field mustard | nucleus | 57.96 | 64.33 |
| Bra026353.1-P | Field mustard | nucleus | 57.96 | 64.33 |
| CDX89253 | Canola | nucleus | 57.96 | 64.33 |
| AT4G27410.3 | Thale cress | nucleus | 58.56 | 62.1 |
| AT3G15500.1 | Thale cress | nucleus | 57.96 | 60.88 |
| AT1G52890.1 | Thale cress | nucleus | 57.96 | 60.88 |
| Bra001596.1-P | Field mustard | nucleus | 52.85 | 59.66 |
| CDX75833 | Canola | nucleus | 52.85 | 59.26 |
| CDX98560 | Canola | nucleus | 56.46 | 58.75 |
| CDX97674 | Canola | nucleus | 56.46 | 58.57 |
| CDY21844 | Canola | nucleus | 55.56 | 58.36 |
| CDY20109 | Canola | nucleus | 55.56 | 58.36 |
| Bra021113.1-P | Field mustard | nucleus | 55.26 | 58.04 |
| Bra027238.1-P | Field mustard | nucleus | 56.46 | 56.46 |
| Bra018998.1-P | Field mustard | nucleus | 57.36 | 49.87 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 39.34 | 43.81 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 37.54 | 42.52 |
| VIT_06s0004g00020.t01 | Wine grape | nucleus | 37.84 | 42.42 |
| VIT_01s0026g02710.t01 | Wine grape | nucleus | 34.83 | 41.13 |
| VIT_06s0004g02340.t01 | Wine grape | nucleus | 22.22 | 41.11 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 25.53 | 39.72 |
| VIT_00s0375g00040.t01 | Wine grape | nucleus | 39.34 | 39.58 |
| VIT_19s0014g03300.t01 | Wine grape | nucleus | 39.04 | 36.83 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 27.33 | 32.97 |
| VIT_08s0007g07670.t01 | Wine grape | nucleus | 33.03 | 32.84 |
| VIT_08s0040g02110.t01 | Wine grape | nucleus | 33.63 | 32.75 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 26.73 | 32.13 |
| VIT_06s0004g03080.t01 | Wine grape | nucleus | 34.53 | 31.94 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 27.03 | 31.69 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 27.33 | 30.85 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 27.33 | 30.54 |
| VIT_04s0008g00150.t01 | Wine grape | nucleus | 25.53 | 30.47 |
| VIT_03s0038g03410.t01 | Wine grape | nucleus | 25.53 | 30.47 |
| VIT_14s0108g00860.t01 | Wine grape | nucleus | 30.63 | 28.9 |
| VIT_01s0026g02360.t01 | Wine grape | nucleus | 32.13 | 26.68 |
| VIT_12s0035g02020.t01 | Wine grape | nucleus | 28.53 | 20.83 |
Protein Annotations
| EntrezGene:100243607 | wikigene:100243607 | MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:AM484265 | ProteinID:CAN62145 |
| ProteinID:CAN62145.1 | ProteinID:CBI20350 | ProteinID:CBI20350.3 | UniProt:E0CSQ1 | EMBL:FN595229 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | EntrezGene:LOC100243607 | wikigene:LOC100243607 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR44908 | SUPFAM:SSF101941 |
| TIGR:TC60322 | UniParc:UPI00015C79B3 | ArrayExpress:VIT_19s0014g03290 | EnsemblPlantsGene:VIT_19s0014g03290 | EnsemblPlants:VIT_19s0014g03290.t01 | unigene:Vvi.1428 |
| RefSeq:XP_002284668 | RefSeq:XP_002284668.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr19:+:3412628..3414263
Molecular Weight (calculated)
37192.7 Da
IEP (calculated)
8.888
GRAVY (calculated)
-0.550
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGQG FSLEIIGEID LYKFDPWVLP SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKVITTEGRK VGIKKALVFY VGKAPKGTKT NWIMHEYRLL ENSRKNGSSK LDDWVLCRIY KKNSNSSKPI AAVLPSKAHS NGSSSSSSSH LDDVLESLPE
201: IDDRFFSPNR MNSLRVSQPD EKVNFHNLGS GNFDWATLAG VSSLQELVSG VQSHAQPPAA VNNSNEMYVP SLPPLIQAEE EVQSGLRTQR VDPVMNQGFF
301: PQNSNAFSQS FSNSLDPFGF RYPTQPSGFG YRQ
101: DKVITTEGRK VGIKKALVFY VGKAPKGTKT NWIMHEYRLL ENSRKNGSSK LDDWVLCRIY KKNSNSSKPI AAVLPSKAHS NGSSSSSSSH LDDVLESLPE
201: IDDRFFSPNR MNSLRVSQPD EKVNFHNLGS GNFDWATLAG VSSLQELVSG VQSHAQPPAA VNNSNEMYVP SLPPLIQAEE EVQSGLRTQR VDPVMNQGFF
301: PQNSNAFSQS FSNSLDPFGF RYPTQPSGFG YRQ
001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ
Arabidopsis Description
RD26NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JIU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.