Factsheet for Solyc07g063410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049665	Potato	nucleus	94.1	94.1
VIT_19s0014g03290.t01	Wine grape	nucleus	64.61	69.07
Solyc12g013620.1.1	Tomato	nucleus	62.64	63.9
KRH27201	Soybean	nucleus	59.83	61.74
KRH22137	Soybean	nucleus	59.27	61.52
Solyc04g005610.2.1	Tomato	nucleus	33.99	44.0
Solyc05g007770.2.1	Tomato	nucleus	33.71	42.55
Solyc11g017470.1.1	Tomato	nucleus	34.27	41.92
Solyc04g009440.2.1	Tomato	nucleus	34.83	41.2
Solyc06g060230.2.1	Tomato	nucleus	33.99	40.88
Solyc07g063420.2.1	Tomato	nucleus	36.52	39.51
Solyc10g006880.2.1	Tomato	nucleus	38.2	38.31
Solyc10g083450.1.1	Tomato	cytosol	26.12	32.18
Solyc02g061780.2.1	Tomato	nucleus	21.63	31.56
Solyc11g065540.1.1	Tomato	nucleus	26.69	30.74
Solyc02g069960.2.1	Tomato	nucleus	26.4	30.32
Solyc10g055760.1.1	Tomato	cytosol	23.31	29.33
Solyc05g021090.2.1	Tomato	nucleus	22.19	28.32
Solyc07g045030.2.1	Tomato	nucleus	25.0	26.89
Solyc05g007550.1.1	Tomato	nucleus	27.81	25.38
Solyc01g102740.2.1	Tomato	nucleus	28.65	24.7
Solyc02g087920.2.1	Tomato	nucleus	25.28	23.5
Solyc07g006840.1.1	Tomato	nucleus	29.21	21.53

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:K4CH24	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR44908	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc07g063410.2	EnsemblPlants:Solyc07g063410.2.1	UniParc:UPI000276BE3F	SEG:seg

Description

No Description!

Coordinates

chr7:+:65883839..65885416

Molecular Weight (calculated)

40093.8 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.623

Length

356 amino acids

Sequence
(BLAST)

001: MGVQEMDPLT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKVITTDGRK VGIKKALVFY IGKAPKGTKT NWIMHEYRLS EPTTKTGSSR LDDWVLCRIY KKNSGGQKSS CSDLQNKDIS HASSSSSSSQ FDDMLESLPA
201: IEDRYFSLPR VNSIRNFQQN DKINLQQLSS GNFDWAAMAG LNSFPELRTG NQVPTPGNQT PVLINTNQYH NHNDNLNNFN EFFANSTALN FHGEVKFEGG
301: VDQEVESSVR AQRLNSVNPG FFQENSTGFS SSYTNSVPDP FGIRYPTQTV NMGFTG

Best Arabidopsis Sequence Match ( AT4G27410.2 )
(BLAST)

001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ

Arabidopsis Description

RD26NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JIU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.