Factsheet for Solyc11g065540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093822	Potato	nucleus	76.38	79.46
Solyc10g083450.1.1	Tomato	cytosol	47.9	51.21
Solyc04g005610.2.1	Tomato	nucleus	32.69	36.73
Solyc05g007770.2.1	Tomato	nucleus	32.04	35.11
Solyc06g060230.2.1	Tomato	nucleus	32.69	34.12
Solyc11g017470.1.1	Tomato	nucleus	31.72	33.68
Solyc04g009440.2.1	Tomato	nucleus	30.42	31.23
Solyc07g063420.2.1	Tomato	nucleus	33.01	31.0
Solyc12g013620.1.1	Tomato	nucleus	32.04	28.37
Solyc10g006880.2.1	Tomato	nucleus	32.36	28.17
Solyc02g061780.2.1	Tomato	nucleus	22.01	27.87
Solyc07g063410.2.1	Tomato	nucleus	30.74	26.69
Os05t0415400-01	Rice	extracellular, nucleus, plastid	26.21	26.13
Solyc05g021090.2.1	Tomato	nucleus	23.3	25.81
Solyc10g055760.1.1	Tomato	cytosol	23.3	25.44
Solyc02g069960.2.1	Tomato	nucleus	25.24	25.16
Solyc07g045030.2.1	Tomato	nucleus	24.92	23.26
Solyc02g087920.2.1	Tomato	nucleus	26.21	21.15
Solyc05g007550.1.1	Tomato	nucleus	26.54	21.03
Solyc01g102740.2.1	Tomato	nucleus	25.24	18.89
Solyc07g006840.1.1	Tomato	nucleus	28.8	18.43
Os02t0745300-00	Rice	plastid	0.97	1.82

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:K4D9G4	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31719	PANTHER:PTHR31719:SF81	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc11g065540.1	EnsemblPlants:Solyc11g065540.1.1	UniParc:UPI000276997C

Description

No Description!

Coordinates

chr11:+:51043992..51045678

Molecular Weight (calculated)

35992.2 Da

IEP (calculated)

5.002

GRAVY (calculated)

-0.820

Length

309 amino acids

Sequence
(BLAST)

001: MVETRDHNFV YPPGYRFCPH DEELILHYLK KKVMNEFLPY NIIKDVNLYK YCPNELAENF PILGEKEWYF FTPRRRKYPN GERPNRAAGT GYWKATGADK
101: PIIHKNVKVG FRKALVFYEG KPPNGIKTNW IMHEFRVDES RMIKTHASDM RLDDWVLCRI YKKVDKSSKT QTPPQKDDDH EQENPINLAE VENPINLAEV
201: ENPINSGAEV ENPINSGAEV WNPTNSGAIA NYFYEETMNS CGESQPTYQN NPNIAINPYS CYDPTLNYVL NLPPPFPLDN MQYEPNTNLS DQINYNIYDC
301: DDLDKNQFL

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.