Factsheet for Solyc10g006880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064428	Potato	nucleus	92.11	93.16
CDX82430	Canola	nucleus	41.13	73.37
CDY22671	Canola	nucleus	41.13	73.37
Solyc07g063420.2.1	Tomato	nucleus	60.56	65.35
VIT_19s0014g03300.t01	Wine grape	nucleus	61.13	61.47
CDY56427	Canola	nucleus	51.83	56.27
CDY69545	Canola	nucleus	48.17	54.81
CDY20131	Canola	nucleus	52.96	53.71
Bra021114.1-P	Field mustard	nucleus	53.52	53.07
CDY53806	Canola	nucleus	47.32	52.83
CDX97675	Canola	nucleus	50.7	52.48
AT3G15510.1	Thale cress	nucleus	53.52	52.2
Bra018997.1-P	Field mustard	nucleus	47.89	51.99
Bra027237.1-P	Field mustard	nucleus	50.99	51.57
Bra001597.1-P	Field mustard	nucleus	50.14	50.86
AT1G52880.1	Thale cress	nucleus	45.63	50.62
CDX98562	Canola	nucleus	49.86	49.3
GSMUA_Achr9P19520_001	Banana	nucleus	43.66	47.55
GSMUA_Achr1P08860_001	Banana	nucleus	45.35	44.85
Solyc04g005610.2.1	Tomato	nucleus	33.52	43.27
Solyc05g007770.2.1	Tomato	nucleus	34.08	42.91
Solyc06g060230.2.1	Tomato	nucleus	34.37	41.22
TraesCS2D01G214100.1	Wheat	nucleus	45.63	40.6
Solyc11g017470.1.1	Tomato	nucleus	33.24	40.55
HORVU2Hr1G039640.2	Barley	nucleus	45.63	40.0
TraesCS2B01G228900.1	Wheat	nucleus	45.63	39.9
TraesCS2A01G201800.2	Wheat	nucleus	45.63	39.8
Solyc04g009440.2.1	Tomato	nucleus	33.52	39.53
OQU90111	Sorghum	nucleus	46.2	39.23
Zm00001d021818_P002	Maize	nucleus	45.63	38.66
Os07t0566500-01	Rice	nucleus	46.2	38.59
TraesCS6D01G096300.1	Wheat	nucleus	44.51	38.44
TraesCS6A01G108300.2	Wheat	nucleus	44.79	38.22
Solyc07g063410.2.1	Tomato	nucleus	38.31	38.2
Solyc12g013620.1.1	Tomato	nucleus	37.46	38.11
HORVU6Hr1G019380.2	Barley	plastid	43.66	37.8
Solyc02g061780.2.1	Tomato	nucleus	23.38	34.02
Solyc10g083450.1.1	Tomato	cytosol	27.32	33.56
Solyc11g065540.1.1	Tomato	nucleus	28.17	32.36
Solyc02g069960.2.1	Tomato	nucleus	24.51	28.06
Solyc05g021090.2.1	Tomato	nucleus	21.97	27.96
Solyc10g055760.1.1	Tomato	cytosol	22.25	27.92
Solyc07g045030.2.1	Tomato	nucleus	24.79	26.59
Solyc05g007550.1.1	Tomato	nucleus	25.92	23.59
Solyc02g087920.2.1	Tomato	nucleus	25.07	23.24
Solyc01g102740.2.1	Tomato	nucleus	25.63	22.03
Solyc07g006840.1.1	Tomato	nucleus	29.86	21.95

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AY573802	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR45430
PANTHER:PTHR45430:SF1	UniProt:Q56UP7	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc10g006880.2	EnsemblPlants:Solyc10g006880.2.1	UniParc:UPI00004F72DF
SEG:seg	:	:	:	:	:

Description

NAC transcription factor 25 [Source:Projected from Arabidopsis thaliana (AT1G61110) UniProtKB/Swiss-Prot;Acc:Q8GY42]

Coordinates

chr10:-:1305620..1308510

Molecular Weight (calculated)

40267.2 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.790

Length

355 amino acids

Sequence
(BLAST)

001: MESTDSSTGT RHQPQLPPGF RFHPTDEELI VHYLKKRVAG APIPVDIIGE IDLYKFDPWE LPAKAIFGEQ EWFFFSPRDR KYPNGARPNR AATSGYWKAT
101: GTDKPVFTSG GTQKVGVKKA LVFYGGKPPK GVKTNWIMHE YRVVENKTNN KPLGCDNIVA NKKGSLRLDD WVLCRIYKKN NTQRSIDDLH DMLGSIPQNV
201: PNSILQGIKP SNYGTILLEN ESNMYDGIMN NTNDIINNNN RSIPQISSKR TMHGGLYWNN DEATTTTTTI DRNHSPNTKR FLVENNEDDG LNMNNISRIT
301: NHEQSSSIAN FLSQFPQNPS IQQQQQQQEE VLGSLNDGVV FRQPYNQVTG MNWYS

Best Arabidopsis Sequence Match ( AT3G15510.1 )
(BLAST)

001: MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVAIIA EVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA
101: TGTDKPVLAS DGNQKVGVKK ALVFYSGKPP KGVKSDWIMH EYRLIENKPN NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN ASRHVDNDKD HDMIDYIFRK
201: IPPSLSMAAA STGLHQHHHN VSRSMNFFPG KFSGGGYGIF SDGGNTSIYD GGGMINNIGT DSVDHDNNAD VVGLNHASSS GPMMMANLKR TLPVPYWPVA
301: DEEQDASPSK RFHGVGGGGG DCSNMSSSMM EETPPLMQQQ GGVLGDGLFR TTSYQLPGLN WYSS

Arabidopsis Description

NAC056NAC transcription factor 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.