Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82430 | Canola | nucleus | 44.76 | 79.4 |
| CDY22671 | Canola | nucleus | 44.19 | 78.39 |
| KRH22138 | Soybean | nucleus | 71.95 | 67.73 |
| KRH27199 | Soybean | nucleus | 71.67 | 67.47 |
| PGSC0003DMT400064428 | Potato | nucleus | 61.76 | 62.11 |
| VIT_00s0375g00040.t01 | Wine grape | nucleus | 58.07 | 61.93 |
| CDY69545 | Canola | nucleus | 54.67 | 61.86 |
| Solyc10g006880.2.1 | Tomato | nucleus | 61.47 | 61.13 |
| CDX97675 | Canola | nucleus | 59.21 | 60.93 |
| CDY56427 | Canola | nucleus | 56.09 | 60.55 |
| CDY20131 | Canola | nucleus | 59.77 | 60.29 |
| CDY53806 | Canola | nucleus | 54.11 | 60.06 |
| Bra027237.1-P | Field mustard | nucleus | 59.49 | 59.83 |
| AT3G15510.1 | Thale cress | nucleus | 61.47 | 59.62 |
| Bra021114.1-P | Field mustard | nucleus | 60.34 | 59.5 |
| Bra018997.1-P | Field mustard | nucleus | 54.96 | 59.33 |
| AT1G52880.1 | Thale cress | nucleus | 53.26 | 58.75 |
| CDX98562 | Canola | nucleus | 59.21 | 58.22 |
| Bra001597.1-P | Field mustard | nucleus | 57.22 | 57.71 |
| GSMUA_Achr9P19520_001 | Banana | nucleus | 49.29 | 53.37 |
| VIT_01s0026g02710.t01 | Wine grape | nucleus | 39.66 | 49.65 |
| GSMUA_Achr1P08860_001 | Banana | nucleus | 49.86 | 49.03 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 37.11 | 44.56 |
| VIT_06s0004g00020.t01 | Wine grape | nucleus | 37.39 | 44.44 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 36.83 | 43.48 |
| VIT_06s0004g02340.t01 | Wine grape | nucleus | 21.25 | 41.67 |
| VIT_08s0007g07670.t01 | Wine grape | nucleus | 38.81 | 40.9 |
| VIT_19s0014g03290.t01 | Wine grape | nucleus | 36.83 | 39.04 |
| VIT_08s0040g02110.t01 | Wine grape | nucleus | 35.98 | 37.13 |
| VIT_06s0004g03080.t01 | Wine grape | nucleus | 36.26 | 35.56 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 21.53 | 35.51 |
| VIT_03s0038g03410.t01 | Wine grape | nucleus | 25.78 | 32.62 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 25.21 | 32.25 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 24.08 | 30.69 |
| VIT_04s0008g00150.t01 | Wine grape | nucleus | 24.08 | 30.47 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 24.93 | 29.53 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 23.51 | 29.23 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 24.36 | 29.15 |
| VIT_14s0108g00860.t01 | Wine grape | nucleus | 28.61 | 28.61 |
| VIT_01s0026g02360.t01 | Wine grape | nucleus | 29.46 | 25.94 |
| VIT_12s0035g02020.t01 | Wine grape | nucleus | 26.91 | 20.83 |
Protein Annotations
| EntrezGene:100248744 | wikigene:100248744 | MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:CCB46371 | ProteinID:CCB46371.1 |
| UniProt:F6H275 | EMBL:FN595229 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | EntrezGene:LOC100248744 | wikigene:LOC100248744 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFscan:PS51005 | PANTHER:PTHR45430 | SUPFAM:SSF101941 | TIGR:TC69267 | UniParc:UPI00015C79B2 | ArrayExpress:VIT_19s0014g03300 |
| EnsemblPlantsGene:VIT_19s0014g03300 | EnsemblPlants:VIT_19s0014g03300.t01 | RefSeq:XP_002284654 | RefSeq:XP_002284654.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr19:+:3429396..3431041
Molecular Weight (calculated)
38933.9 Da
IEP (calculated)
8.704
GRAVY (calculated)
-0.622
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MESTDSSSGS PQPQLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL PAKASFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG
101: TDKPVLTSGG TQKVGVKKAL VFYGGKPPKG IKTNWIMHEY RLADNKVNTK PPGCDMGNKK NSLRLDDWVL CRIYKKNNTH RTLDPDKDDS MDDMLGPVPT
201: SISMGQQSLK LQFPKVPNYS ALLENEQSLF EGMINSDGIN SSGTISQLAC SSSKPDHLSL VAATTSSILP LKRTLPSLYW NDDDTAGPST TKRFQAENTD
301: GNIGRTTDGN NSIATLLSQL PQTPSLHQQS MLGSLGEGVF RQPFQLPGMN WYA
101: TDKPVLTSGG TQKVGVKKAL VFYGGKPPKG IKTNWIMHEY RLADNKVNTK PPGCDMGNKK NSLRLDDWVL CRIYKKNNTH RTLDPDKDDS MDDMLGPVPT
201: SISMGQQSLK LQFPKVPNYS ALLENEQSLF EGMINSDGIN SSGTISQLAC SSSKPDHLSL VAATTSSILP LKRTLPSLYW NDDDTAGPST TKRFQAENTD
301: GNIGRTTDGN NSIATLLSQL PQTPSLHQQS MLGSLGEGVF RQPFQLPGMN WYA
001: MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVAIIA EVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA
101: TGTDKPVLAS DGNQKVGVKK ALVFYSGKPP KGVKSDWIMH EYRLIENKPN NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN ASRHVDNDKD HDMIDYIFRK
201: IPPSLSMAAA STGLHQHHHN VSRSMNFFPG KFSGGGYGIF SDGGNTSIYD GGGMINNIGT DSVDHDNNAD VVGLNHASSS GPMMMANLKR TLPVPYWPVA
301: DEEQDASPSK RFHGVGGGGG DCSNMSSSMM EETPPLMQQQ GGVLGDGLFR TTSYQLPGLN WYSS
101: TGTDKPVLAS DGNQKVGVKK ALVFYSGKPP KGVKSDWIMH EYRLIENKPN NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN ASRHVDNDKD HDMIDYIFRK
201: IPPSLSMAAA STGLHQHHHN VSRSMNFFPG KFSGGGYGIF SDGGNTSIYD GGGMINNIGT DSVDHDNNAD VVGLNHASSS GPMMMANLKR TLPVPYWPVA
301: DEEQDASPSK RFHGVGGGGG DCSNMSSSMM EETPPLMQQQ GGVLGDGLFR TTSYQLPGLN WYSS
Arabidopsis Description
NAC056NAC transcription factor 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.