Factsheet for VIT_06s0004g03080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G032680.1	Barley	nucleus	29.72	51.94
KRH22920	Soybean	nucleus	48.33	49.86
KRH26398	Soybean	nucleus	47.22	48.71
VIT_08s0040g02110.t01	Wine grape	nucleus	43.89	46.2
VIT_01s0026g02710.t01	Wine grape	nucleus	34.72	44.33
VIT_06s0004g02340.t01	Wine grape	nucleus	20.0	40.0
VIT_00s0375g00040.t01	Wine grape	nucleus	35.28	38.37
VIT_18s0001g02300.t01	Wine grape	nucleus	30.56	36.79
VIT_08s0007g07670.t01	Wine grape	nucleus	33.89	36.42
VIT_07s0031g02610.t01	Wine grape	nucleus	29.72	36.39
VIT_19s0014g03300.t01	Wine grape	nucleus	35.56	36.26
TraesCS3B01G194000.1	Wheat	nucleus	30.28	35.39
TraesCS3A01G162900.1	Wheat	cytosol	30.28	35.39
TraesCS3D01G170000.1	Wheat	nucleus	30.0	35.06
VIT_06s0004g00020.t01	Wine grape	nucleus	28.89	35.02
VIT_19s0027g00880.t01	Wine grape	nucleus	20.56	34.58
VIT_19s0014g03290.t01	Wine grape	nucleus	31.94	34.53
EER99985	Sorghum	nucleus	31.11	31.64
VIT_04s0008g00150.t01	Wine grape	nucleus	22.78	29.39
VIT_03s0038g03410.t01	Wine grape	nucleus	22.22	28.67
VIT_19s0027g00860.t01	Wine grape	nucleus	21.39	27.9
VIT_19s0027g00870.t01	Wine grape	nucleus	21.39	27.8
VIT_19s0027g00840.t01	Wine grape	nucleus	21.67	27.46
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	21.94	26.78
VIT_12s0028g00860.t01	Wine grape	nucleus	21.94	26.51
VIT_14s0108g00860.t01	Wine grape	nucleus	24.72	25.21
VIT_01s0026g02360.t01	Wine grape	nucleus	26.39	23.69
VIT_12s0035g02020.t01	Wine grape	nucleus	23.06	18.2

Protein Annotations

EntrezGene:100253566	wikigene:100253566	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB43658	ProteinID:CCB43658.1
UniProt:F6GTZ4	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100253566	wikigene:LOC100253566	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR45430	PANTHER:PTHR45430:SF1	SUPFAM:SSF101941	UniParc:UPI00015C7DE6	ArrayExpress:VIT_06s0004g03080
EnsemblPlantsGene:VIT_06s0004g03080	EnsemblPlants:VIT_06s0004g03080.t01	RefSeq:XP_002282243	RefSeq:XP_002282243.2	RefSeq:XP_010651145.2	SEG:seg

Description

No Description!

Coordinates

chr6:+:3826347..3828617

Molecular Weight (calculated)

40821.9 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.803

Length

360 amino acids

Sequence
(BLAST)

001: MEREPNSSFQ FPPGFRFHPS DEELIVHYLQ KKVTSHPLPA SVIAEIDLYK YNPWELPKKA LFGEEEWYFF SPRDRKYPNG VRPNRAAASG FWKATGTDKP
101: ILTSCGSKSI GVKKALVFYI GRPPRGVKTE WIMNEYRLLN TMNRPGSRSK GSMRLDDWVL CRVRHKGNMP KNTCEGQDSP STELISYLPK IEEQQPMHTK
201: HNDMDTGYLY NHCELIASIL AGHPLPHNET ISNVTFKGSN NSNSHGSVHE DGSDKVNLPI TVSSFDSFFN PLNGNSTEKH RYENPPPSQK MLTSNNEDES
301: LSPHKTSTNN HMNFHSQSQS QVSIINSNPS NPICLQKPNH VLHRQISTVM NWPFTEGNGS

Best Arabidopsis Sequence Match ( AT1G61110.1 )
(BLAST)

001: MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKADS VPLPVSIIAE IDLYKFDPWE LPSKASFGEH EWYFFSPRDR KYPNGVRPNR AATSGYWKAT
101: GTDKPIFTCN SHKVGVKKAL VFYGGKPPKG IKTDWIMHEY RLTDGNLSTA AKPPDLTTTR KNSLRLDDWV LCRIYKKNSS QRPTMERVLL REDLMEGMLS
201: KSSANSSSTS VLDNNDNNNN NNEEHFFDGM VVSSDKRSLC GQYRMGHEAS GSSSFGSFLS SKRFHHTGDL NNDNYNVSFV SMLSEIPQSS GFHANGVMDT
301: TSSLADHGVL RQAFQLPNMN WHS

Arabidopsis Description

NAC025NAC transcription factor 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY42]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.