Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 92.39 | 92.06 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 78.26 | 76.06 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 53.26 | 68.69 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 63.77 | 59.66 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 59.06 | 54.7 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 51.81 | 49.83 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 47.1 | 49.62 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 43.48 | 48.0 |
| GSMUA_Achr10P... | Banana | cytosol | 46.01 | 47.57 |
| Zm00001d007850_P001 | Maize | nucleus | 43.12 | 47.41 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 51.09 | 45.93 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 50.0 | 45.39 |
| PGSC0003DMT400003082 | Potato | nucleus | 45.65 | 44.68 |
| Solyc05g021090.2.1 | Tomato | nucleus | 44.57 | 44.09 |
| HORVU5Hr1G099470.2 | Barley | cytosol | 50.0 | 40.95 |
| Zm00001d013151_P001 | Maize | cytosol | 49.64 | 40.77 |
| TraesCS5A01G411900.1 | Wheat | nucleus | 50.0 | 40.23 |
| TraesCS5D01G421100.1 | Wheat | nucleus | 49.28 | 39.88 |
| EES17466 | Sorghum | nucleus | 43.48 | 39.47 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 48.19 | 39.12 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 49.28 | 38.86 |
| TraesCS5B01G415600.1 | Wheat | nucleus | 49.28 | 38.75 |
| TraesCS5A01G411800.1 | Wheat | nucleus | 49.28 | 38.64 |
| EER95852 | Sorghum | nucleus | 47.83 | 38.48 |
| Zm00001d031164_P001 | Maize | nucleus | 42.39 | 38.24 |
| TraesCS5D01G420800.1 | Wheat | nucleus | 50.36 | 38.19 |
| HORVU5Hr1G099460.1 | Barley | nucleus | 47.83 | 38.15 |
| EER93360 | Sorghum | nucleus | 51.09 | 38.11 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 39.49 | 37.72 |
| Os03t0777000-01 | Rice | nucleus | 49.28 | 37.57 |
| Zm00001d034277_P001 | Maize | cytosol, mitochondrion, nucleus | 49.64 | 37.23 |
| VIT_06s0004g02340.t01 | Wine grape | nucleus | 23.91 | 36.67 |
| TraesCS5A01G411700.1 | Wheat | nucleus | 50.0 | 36.6 |
| Zm00001d018773_P001 | Maize | nucleus | 47.46 | 36.59 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 49.64 | 36.34 |
| TraesCS5D01G421000.1 | Wheat | nucleus | 49.64 | 35.68 |
| VIT_14s0108g00860.t01 | Wine grape | nucleus | 42.03 | 32.86 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 31.88 | 29.93 |
| VIT_01s0026g02710.t01 | Wine grape | nucleus | 30.07 | 29.43 |
| VIT_01s0026g02360.t01 | Wine grape | nucleus | 42.75 | 29.43 |
| VIT_06s0004g00020.t01 | Wine grape | nucleus | 31.52 | 29.29 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 30.07 | 27.76 |
| VIT_19s0014g03290.t01 | Wine grape | nucleus | 32.97 | 27.33 |
| VIT_03s0038g03410.t01 | Wine grape | nucleus | 27.54 | 27.24 |
| VIT_00s0375g00040.t01 | Wine grape | nucleus | 32.25 | 26.89 |
| VIT_04s0008g00150.t01 | Wine grape | nucleus | 27.17 | 26.88 |
| VIT_19s0014g03300.t01 | Wine grape | nucleus | 32.25 | 25.21 |
| VIT_08s0007g07670.t01 | Wine grape | nucleus | 28.62 | 23.58 |
| VIT_08s0040g02110.t01 | Wine grape | nucleus | 28.99 | 23.39 |
| VIT_06s0004g03080.t01 | Wine grape | nucleus | 27.9 | 21.39 |
| VIT_12s0035g02020.t01 | Wine grape | nucleus | 33.33 | 20.18 |
Protein Annotations
| EntrezGene:100257751 | wikigene:100257751 | MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:CCB47221 | ProteinID:CCB47221.1 |
| UniProt:F6H4T2 | EMBL:FN595234 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | EntrezGene:LOC100257751 | wikigene:LOC100257751 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFscan:PS51005 | PANTHER:PTHR44543 | SUPFAM:SSF101941 | UniParc:UPI00015CA380 | ArrayExpress:VIT_19s0027g00860 | EnsemblPlantsGene:VIT_19s0027g00860 |
| EnsemblPlants:VIT_19s0027g00860.t01 | RefSeq:XP_002265883 | RefSeq:XP_002265883.1 | : | : | : |
Description
No Description!
Coordinates
chr19:+:20225998..20227553
Molecular Weight (calculated)
32450.0 Da
IEP (calculated)
7.572
GRAVY (calculated)
-0.884
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATMDDEQV VLPGFRFHPT DEELVSFYLR RKIEKKPISF ELIKQMDIYK YDPWDLPTNS SVTDKEWYFF CKRGRKYRNS IRPNRVTGSG FWKATGIDKP
101: IYSVQGRGHD CVGLKKSLVY YRGSAGKGTK TDWMMHEFRL PADQKNTTHN ATTADDEVEI WTLCRIFKQN VSYRKSTPDW RETSAKRKPT KSRPKTGNMD
201: SENWEGYISF GAPEALDNEK KLFVGHNMNE RNQFHVVSDP ESCFSVLSEE AREFFTNRNW DEILSAMDYD FDPYHF
101: IYSVQGRGHD CVGLKKSLVY YRGSAGKGTK TDWMMHEFRL PADQKNTTHN ATTADDEVEI WTLCRIFKQN VSYRKSTPDW RETSAKRKPT KSRPKTGNMD
201: SENWEGYISF GAPEALDNEK KLFVGHNMNE RNQFHVVSDP ESCFSVLSEE AREFFTNRNW DEILSAMDYD FDPYHF
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.