Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G415600.1 | Wheat | nucleus | 83.53 | 80.91 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 82.94 | 80.57 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 82.35 | 74.27 |
| Os03t0777000-01 | Rice | nucleus | 65.59 | 61.6 |
| Zm00001d007850_P001 | Maize | nucleus | 42.94 | 58.17 |
| EER95852 | Sorghum | nucleus | 54.71 | 54.23 |
| Zm00001d018773_P001 | Maize | nucleus | 53.24 | 50.56 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 31.76 | 50.47 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 40.29 | 49.46 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 37.94 | 49.24 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 42.65 | 48.66 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 43.82 | 48.53 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 39.12 | 48.19 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 35.29 | 48.0 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 38.53 | 46.13 |
| KRH73618 | Soybean | cytosol | 42.65 | 45.31 |
| Bra000282.1-P | Field mustard | nucleus | 36.18 | 45.22 |
| Solyc05g021090.2.1 | Tomato | nucleus | 36.76 | 44.8 |
| AT2G43000.1 | Thale cress | nucleus | 36.18 | 44.73 |
| KRH14512 | Soybean | nucleus | 42.65 | 44.48 |
| PGSC0003DMT400090327 | Potato | cytosol | 37.06 | 44.37 |
| AT3G12910.1 | Thale cress | nucleus | 39.41 | 44.22 |
| PGSC0003DMT400054407 | Potato | nucleus | 40.59 | 43.95 |
| Solyc02g069960.2.1 | Tomato | nucleus | 40.0 | 43.87 |
| CDY53654 | Canola | nucleus | 35.88 | 43.73 |
| CDY64562 | Canola | nucleus | 37.65 | 43.54 |
| KRH46012 | Soybean | nucleus | 38.82 | 43.42 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 37.65 | 43.39 |
| CDY43391 | Canola | nucleus | 37.65 | 43.39 |
| CDX82569 | Canola | nucleus | 38.53 | 43.38 |
| CDY55499 | Canola | nucleus | 35.59 | 43.37 |
| Bra037743.1-P | Field mustard | nucleus | 35.29 | 43.32 |
| CDY30373 | Canola | nucleus | 35.29 | 43.32 |
| PGSC0003DMT400003082 | Potato | nucleus | 35.88 | 43.26 |
| Bra004736.1-P | Field mustard | nucleus | 35.59 | 43.21 |
| Bra039353.1-P | Field mustard | nucleus | 38.82 | 43.0 |
| CDY24238 | Canola | nucleus | 38.82 | 43.0 |
| KRG98971 | Soybean | nucleus | 38.24 | 42.76 |
| CDY14865 | Canola | nucleus | 34.41 | 42.24 |
| KRH13702 | Soybean | nucleus | 39.41 | 42.14 |
| Bra034719.1-P | Field mustard | nucleus | 39.41 | 40.98 |
| CDY60122 | Canola | nucleus | 39.41 | 40.98 |
| Solyc07g045030.2.1 | Tomato | nucleus | 38.82 | 39.88 |
| PGSC0003DMT400049124 | Potato | nucleus | 28.82 | 39.2 |
| CDY23551 | Canola | nucleus | 38.82 | 35.2 |
| TraesCS2B01G076000.1 | Wheat | nucleus | 32.06 | 32.44 |
| TraesCS2B01G076100.1 | Wheat | nucleus | 32.65 | 31.53 |
| TraesCS5B01G338700.1 | Wheat | nucleus | 33.82 | 30.18 |
| TraesCS5B01G338400.1 | Wheat | nucleus | 33.82 | 30.18 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 26.18 | 29.87 |
| TraesCS6B01G075200.1 | Wheat | nucleus | 25.0 | 29.82 |
| TraesCS6B01G335700.1 | Wheat | nucleus | 34.12 | 29.82 |
| TraesCS2B01G075900.1 | Wheat | nucleus | 32.94 | 28.94 |
| TraesCS5B01G226800.1 | Wheat | nucleus | 33.53 | 28.93 |
| TraesCS7B01G472200.1 | Wheat | cytosol, nucleus, plastid | 23.53 | 26.94 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 23.82 | 26.91 |
| TraesCS7B01G472600.1 | Wheat | cytosol, nucleus, plastid | 23.24 | 26.33 |
| TraesCS5B01G480900.2 | Wheat | nucleus | 25.29 | 26.3 |
| TraesCS3B01G371200.1 | Wheat | nucleus | 24.12 | 26.28 |
| TraesCS4B01G173600.1 | Wheat | nucleus | 25.88 | 25.43 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 24.71 | 25.15 |
| TraesCS4B01G328800.1 | Wheat | nucleus | 25.0 | 24.5 |
| TraesCS4B01G328900.1 | Wheat | nucleus | 25.0 | 24.15 |
| CDY42810 | Canola | nucleus | 36.18 | 24.12 |
| TraesCS4B01G328700.1 | Wheat | nucleus | 25.0 | 24.08 |
| TraesCS3B01G194000.1 | Wheat | nucleus | 21.76 | 24.03 |
| TraesCS4B01G328600.1 | Wheat | nucleus | 24.71 | 23.93 |
| CDX83510 | Canola | nucleus | 35.88 | 23.92 |
| TraesCS2B01G119000.1 | Wheat | nucleus | 24.41 | 23.71 |
| TraesCS4B01G329100.1 | Wheat | nucleus | 24.41 | 23.58 |
| TraesCS5B01G142100.1 | Wheat | nucleus | 24.41 | 23.45 |
| TraesCS2B01G119100.1 | Wheat | nucleus | 24.41 | 23.31 |
| TraesCS1B01G272600.1 | Wheat | nucleus | 26.47 | 23.26 |
| TraesCS3B01G093300.1 | Wheat | nucleus | 24.12 | 23.23 |
| TraesCS7B01G219400.1 | Wheat | nucleus | 25.59 | 22.36 |
| TraesCS2B01G228900.1 | Wheat | nucleus | 25.29 | 21.18 |
| TraesCS3B01G436900.1 | Wheat | nucleus | 25.59 | 21.12 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR44543 | PANTHER:PTHR44543:SF3 | SUPFAM:SSF101941 | EnsemblPlantsGene:TraesCS4B01G384700 | EnsemblPlants:TraesCS4B01G384700.1 | SEG:seg |
Description
No Description!
Coordinates
chr4B:-:663940839..663942158
Molecular Weight (calculated)
38350.8 Da
IEP (calculated)
5.030
GRAVY (calculated)
-0.610
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAMEMEKLI SEEKVVLGGA GDEEEEDDVV LPGYRFHPTD EELVTFYLRR KVAGKPLSIE VIREMDIYKH DPWDLPKGST VGGEKEWYFF CLRGRKYRNS
101: IRPNRVTGSG FWKATGIDRP IYSAASGGSG SGSGVLIGLK KSLVYYLGKF GKCTKTDWMM HEFRLLPSAP AATNASPSMQ EAEVWTICRI FRRTITYRKQ
201: QTWRTAPTPS AADQSSNTGS FESSEVGHEY MNYLQAPAPI APCIPPQQHQ QYVSQMDAVN SNNFFYEDTM HNQQFQGQWN AAPAAPEPEE KPQNTPSTAV
301: SFHQTDHSHA VAENDFYEVE GYLEEIARMM EVTDTAGFYD
101: IRPNRVTGSG FWKATGIDRP IYSAASGGSG SGSGVLIGLK KSLVYYLGKF GKCTKTDWMM HEFRLLPSAP AATNASPSMQ EAEVWTICRI FRRTITYRKQ
201: QTWRTAPTPS AADQSSNTGS FESSEVGHEY MNYLQAPAPI APCIPPQQHQ QYVSQMDAVN SNNFFYEDTM HNQQFQGQWN AAPAAPEPEE KPQNTPSTAV
301: SFHQTDHSHA VAENDFYEVE GYLEEIARMM EVTDTAGFYD
001: MEKMIEPRDN TRESEDEDAL KLPGFRFHPT DEELVGYYLS KKVLLKKTSK IDEIVSQIDI YKFDPWDLPR SRNTEKESYF FCKRGRKYRN SIRPNRVTGS
101: GFWKATGIDK PVYSDGSNKA VIGLKKTLVY YLGSAGKGNK TDWMMHEFRL PTANDTIPGG PTHSNPTPTS LLHAEVWTLC RIFKRTVSSR KYTPDWRELA
201: NGKRVKQQQS NYQEAYINFG DNESSSSTNV MNVREGKGNY ERSVFQLQQT PYQHQNQPIL MDTTHVDSFQ HFSNDNIHHE TYETWPDELR SVVEFAFPPS
301: FLS
101: GFWKATGIDK PVYSDGSNKA VIGLKKTLVY YLGSAGKGNK TDWMMHEFRL PTANDTIPGG PTHSNPTPTS LLHAEVWTLC RIFKRTVSSR KYTPDWRELA
201: NGKRVKQQQS NYQEAYINFG DNESSSSTNV MNVREGKGNY ERSVFQLQQT PYQHQNQPIL MDTTHVDSFQ HFSNDNIHHE TYETWPDELR SVVEFAFPPS
301: FLS
Arabidopsis Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LSI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.