Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
27440550
|
gfp PMID:
27440550
doi
College of Agronomy, Northwest Agriculture and Forestry University, Yangling, Shaanxi 712100, PR China gang-ping.xue@csiro.au chaishoucheng@126.com., College of Agronomy, Northwest Agriculture and Forestry University, Yangling, Shaanxi 712100, PR China., CSIRO Agriculture, 306 Carmody Rd., St Lucia, Qld 4067, Australia gang-ping.xue@csiro.au chaishoucheng@126.com., CSIRO Agriculture, 306 Carmody Rd., St Lucia, Qld 4067, Australia., CSIRO Agriculture, Clunies Ross Street, Canberra, ACT 2601, Australia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G148800.1 | Wheat | nucleus | 98.59 | 98.59 |
| TraesCS5A01G143200.1 | Wheat | nucleus | 97.46 | 96.1 |
| HORVU5Hr1G045650.7 | Barley | plastid | 94.63 | 81.91 |
| Os11t0126900-01 | Rice | nucleus | 37.57 | 77.78 |
| Os12t0123700-01 | Rice | nucleus | 63.56 | 57.25 |
| EES07907 | Sorghum | plastid | 57.34 | 50.5 |
| EES16571 | Sorghum | nucleus | 57.34 | 47.32 |
| Zm00001d023294_P001 | Maize | nucleus | 55.08 | 41.05 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 32.2 | 38.26 |
| TraesCS4B01G173600.1 | Wheat | nucleus | 37.29 | 38.15 |
| TraesCS6B01G075200.1 | Wheat | nucleus | 30.51 | 37.89 |
| TraesCS2B01G119000.1 | Wheat | nucleus | 37.29 | 37.71 |
| TraesCS2B01G119100.1 | Wheat | nucleus | 37.57 | 37.36 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 31.64 | 37.21 |
| TraesCS3B01G093300.1 | Wheat | nucleus | 37.01 | 37.11 |
| TraesCS3B01G194000.1 | Wheat | nucleus | 31.92 | 36.69 |
| TraesCS3B01G371200.1 | Wheat | nucleus | 31.92 | 36.22 |
| TraesCS5B01G480900.2 | Wheat | nucleus | 31.92 | 34.56 |
| TraesCS2B01G228900.1 | Wheat | nucleus | 37.85 | 33.0 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 31.07 | 32.93 |
| TraesCS7B01G472200.1 | Wheat | cytosol, nucleus, plastid | 21.75 | 25.93 |
| TraesCS7B01G472600.1 | Wheat | cytosol, nucleus, plastid | 21.19 | 25.0 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 24.29 | 24.57 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 23.45 | 24.41 |
| TraesCS4B01G328800.1 | Wheat | nucleus | 23.73 | 24.21 |
| TraesCS4B01G328700.1 | Wheat | nucleus | 24.01 | 24.08 |
| TraesCS5B01G415600.1 | Wheat | nucleus | 23.73 | 23.93 |
| TraesCS4B01G328600.1 | Wheat | nucleus | 23.73 | 23.93 |
| TraesCS4B01G329100.1 | Wheat | nucleus | 23.73 | 23.86 |
| TraesCS2B01G076000.1 | Wheat | nucleus | 22.6 | 23.81 |
| TraesCS2B01G076100.1 | Wheat | nucleus | 23.45 | 23.58 |
| TraesCS4B01G328900.1 | Wheat | nucleus | 23.16 | 23.3 |
| TraesCS5B01G226800.1 | Wheat | nucleus | 25.71 | 23.1 |
| TraesCS6B01G335700.1 | Wheat | nucleus | 25.14 | 22.88 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 24.01 | 22.55 |
| TraesCS1B01G272600.1 | Wheat | nucleus | 24.58 | 22.48 |
| TraesCS5B01G338700.1 | Wheat | nucleus | 23.73 | 22.05 |
| TraesCS5B01G338400.1 | Wheat | nucleus | 23.73 | 22.05 |
| TraesCS2B01G075900.1 | Wheat | nucleus | 23.73 | 21.71 |
| TraesCS7B01G219400.1 | Wheat | nucleus | 22.88 | 20.82 |
| TraesCS3B01G436900.1 | Wheat | nucleus | 23.73 | 20.39 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G142100.1 | EnsemblPlantsGene:TraesCS5B01G142100 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PANTHER:PTHR45430 |
| PFAM:PF02365 | PFscan:PS51005 | SEG:seg | SUPFAM:SSF101941 | MapMan:15.5.17 | : |
Description
No Description!
Coordinates
chr5B:-:267777968..267779316
Molecular Weight (calculated)
39587.4 Da
IEP (calculated)
6.737
GRAVY (calculated)
-0.696
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMGSSAAMP ALPPGFRFHP TDEELIVHYL RRQAASMPSP VPIIAEVNIY KCNPWDLPGK ALFGENEWYF FSPRDRKYPN GARPNRAAGS GYWKATGTDK
101: AILSTPANES IGVKKALVFY RGKPPKGVKT DWIMHEYRLT AADNRTTKRR GSSMRLDDWV LCRIHKKCGN LPNFSSSDQE QEHEQESSTV EDSQNNHTVS
201: SPKSEAFDGD GDDHLQLQQF RPMAIAKSCS LTDLLNTVDY AALSHLLLDG AGASSSDAGA DYQLPPENPL IYSQPPWQQT LHYNNNNGYV NNETIDVPQL
301: PEARVDDYGM NGDKYNGMKR KRSSGSLYCS QLQLPADQYS GMLIHPFLSQ QLHM
101: AILSTPANES IGVKKALVFY RGKPPKGVKT DWIMHEYRLT AADNRTTKRR GSSMRLDDWV LCRIHKKCGN LPNFSSSDQE QEHEQESSTV EDSQNNHTVS
201: SPKSEAFDGD GDDHLQLQQF RPMAIAKSCS LTDLLNTVDY AALSHLLLDG AGASSSDAGA DYQLPPENPL IYSQPPWQQT LHYNNNNGYV NNETIDVPQL
301: PEARVDDYGM NGDKYNGMKR KRSSGSLYCS QLQLPADQYS GMLIHPFLSQ QLHM
001: MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI
101: AVPNGEGFHE NIGIKKALVF YRGKPPKGVK TNWIMHEYRL ADSLSPKRIN SSRSGGSELD DWVLCRIYKK SHASLSSPDV ALVTSNQEHE ENDNEPFVDR
201: GTFLPNLQND QPLKRQKSSC SFSNLLDATD LTFLANFLNE TPENRSESDF SFMIGNFSNP DIYGNHYLDQ KLPQLSSPTS ETSGIGSKRE RVDFAEETIN
301: ASKKMMNTYS YNNSIDQMDH SMMQQPSFLN QELMMSSHLQ YQG
101: AVPNGEGFHE NIGIKKALVF YRGKPPKGVK TNWIMHEYRL ADSLSPKRIN SSRSGGSELD DWVLCRIYKK SHASLSSPDV ALVTSNQEHE ENDNEPFVDR
201: GTFLPNLQND QPLKRQKSSC SFSNLLDATD LTFLANFLNE TPENRSESDF SFMIGNFSNP DIYGNHYLDQ KLPQLSSPTS ETSGIGSKRE RVDFAEETIN
301: ASKKMMNTYS YNNSIDQMDH SMMQQPSFLN QELMMSSHLQ YQG
Arabidopsis Description
NAC047NAC transcription factor 47 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.