Factsheet for PGSC0003DMT400049124

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g045030.2.1	Tomato	nucleus	94.0	71.0
PGSC0003DMT400003082	Potato	nucleus	54.4	48.23
AT2G43000.1	Thale cress	nucleus	42.0	38.18
KRH73618	Soybean	cytosol	48.4	37.81
Bra000282.1-P	Field mustard	nucleus	40.8	37.5
KRH14512	Soybean	nucleus	48.4	37.12
GSMUA_Achr10P...	Banana	cytosol	38.4	35.96
PGSC0003DMT400090327	Potato	cytosol	40.4	35.56
CDY53654	Canola	nucleus	39.6	35.48
CDY55499	Canola	nucleus	39.6	35.48
Bra004736.1-P	Field mustard	nucleus	39.6	35.36
Bra037743.1-P	Field mustard	nucleus	38.4	34.66
CDY30373	Canola	nucleus	38.4	34.66
PGSC0003DMT400054407	Potato	nucleus	42.8	34.08
CDY14865	Canola	nucleus	37.6	33.94
GSMUA_Achr4P23030_001	Banana	nucleus	33.6	33.6
GSMUA_Achr9P10040_001	Banana	nucleus	40.8	33.55
GSMUA_Achr7P00860_001	Banana	nucleus	34.8	33.21
Zm00001d007850_P001	Maize	nucleus	32.8	32.67
GSMUA_Achr4P32010_001	Banana	nucleus	37.2	32.4
GSMUA_Achr5P02170_001	Banana	nucleus	38.0	30.94
HORVU5Hr1G099470.2	Barley	cytosol	41.6	30.86
Zm00001d013151_P001	Maize	cytosol	40.8	30.36
TraesCS5A01G411900.1	Wheat	nucleus	41.2	30.03
TraesCS5D01G421100.1	Wheat	nucleus	40.8	29.91
TraesCS5B01G415600.1	Wheat	nucleus	41.6	29.63
TraesCS5B01G415700.1	Wheat	nucleus	41.2	29.43
EES17466	Sorghum	nucleus	35.6	29.28
TraesCS5A01G411800.1	Wheat	nucleus	40.8	28.98
EER95852	Sorghum	nucleus	39.6	28.86
TraesCS4B01G384700.1	Wheat	cytoskeleton, cytosol, nucleus	39.2	28.82
Zm00001d031164_P001	Maize	nucleus	35.2	28.76
Os03t0777000-01	Rice	nucleus	41.6	28.73
EER93360	Sorghum	nucleus	42.4	28.65
HORVU5Hr1G099460.1	Barley	nucleus	39.6	28.61
Zm00001d034277_P001	Maize	cytosol, mitochondrion, nucleus	42.0	28.53
TraesCS5D01G420800.1	Wheat	nucleus	41.2	28.3
TraesCS5A01G411700.1	Wheat	nucleus	42.4	28.12
Zm00001d018773_P001	Maize	nucleus	39.6	27.65
TraesCS5B01G415400.1	Wheat	nucleus	41.2	27.32
TraesCS5D01G421000.1	Wheat	nucleus	41.6	27.08
HORVU5Hr1G099390.2	Barley	nucleus	30.0	25.95
PGSC0003DMT400022365	Potato	cytosol	22.4	22.86
PGSC0003DMT400045294	Potato	nucleus	25.6	21.62
PGSC0003DMT400023917	Potato	nucleus	24.8	21.31
PGSC0003DMT400003343	Potato	nucleus	33.2	20.96
PGSC0003DMT400007341	Potato	mitochondrion	23.6	20.85
PGSC0003DMT400080307	Potato	nucleus	32.0	20.67
PGSC0003DMT400028190	Potato	nucleus	23.6	20.42
PGSC0003DMT400047440	Potato	nucleus	22.4	19.86
CDX83510	Canola	nucleus	40.4	19.8
CDY42810	Canola	nucleus	40.4	19.8
PGSC0003DMT400082472	Potato	nucleus	23.6	19.47
PGSC0003DMT400093822	Potato	nucleus	22.0	18.52
PGSC0003DMT400049664	Potato	nucleus	24.0	17.7
PGSC0003DMT400039670	Potato	nucleus	24.4	17.38
PGSC0003DMT400047021	Potato	nucleus	27.6	17.08
PGSC0003DMT400064428	Potato	nucleus	23.6	16.81
PGSC0003DMT400049665	Potato	nucleus	23.6	16.57
PGSC0003DMT400048237	Potato	nucleus	22.4	11.45

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005975	GO:GO:0005992
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006561	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009718	GO:GO:0009987
GO:GO:0010120	GO:GO:0010150	GO:GO:0019748	GO:GO:0042538	GO:GO:1900056	InterPro:IPR003441
InterPro:IPR036093	UniProt:M1BNA9	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400019092
PGSC:PGSC0003DMG400019092	EnsemblPlants:PGSC0003DMT400049124	PFscan:PS51005	PANTHER:PTHR44543	PANTHER:PTHR44543:SF2	SUPFAM:SSF101941
UniParc:UPI000296A101	:	:	:	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019092]

Coordinates

chr7:+:42899786..42901666

Molecular Weight (calculated)

28702.7 Da

IEP (calculated)

9.798

GRAVY (calculated)

-0.786

Length

250 amino acids

Sequence
(BLAST)

001: MCRVGDNKEW YFFSMRGRKY KNSVRPNRVT GSGFWKATGI DKPIYSQSNE CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPIWKTNTSN GQLPNPKNIA
101: PEAEVWTLCR IFKRISNYKR FTPDWKQQQQ PVVKQSFGDT SSKACSVQSE ISDDHSNNVI NFKKMAFPQK NITNASSGGN LNYQVDQRNS YYNNSQLITT
201: MPESPFTSSN SIFWNTSAED QEYLFSHGNW DELKSVVDLA MDPPSLFGFK

Best Arabidopsis Sequence Match ( AT2G43000.2 )
(BLAST)

001: MRGRKYRNSV RPNRVTGSGF WKATGIDKPV YSNLDCVGLK KSLVYYLGSA GKGTKTDWMM HEFRLPSTTK TDSPAQQAEV WTLCRIFKRV TSQRNPTILP
101: PNRKPVITLT DTCSKTSSLD SDHTSHRTVD SMSHEPPLPQ PQNPYWNQHI VGFNQPTYTG NDNNLLMSFW NGNGGDFIGD SASWDELRSV IDGNTKP

Arabidopsis Description

JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.