Factsheet for PGSC0003DMT400093822

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065540.1.1	Tomato	nucleus	79.46	76.38
PGSC0003DMT400047440	Potato	nucleus	35.02	36.88
PGSC0003DMT400007341	Potato	mitochondrion	33.33	34.98
PGSC0003DMT400045294	Potato	nucleus	34.34	34.46
PGSC0003DMT400023917	Potato	nucleus	33.33	34.02
PGSC0003DMT400082472	Potato	nucleus	31.99	31.35
PGSC0003DMT400049664	Potato	nucleus	34.01	29.79
PGSC0003DMT400022365	Potato	cytosol	23.57	28.57
PGSC0003DMT400064428	Potato	nucleus	33.0	27.92
PGSC0003DMT400090327	Potato	cytosol	26.6	27.82
PGSC0003DMT400039670	Potato	nucleus	32.32	27.35
PGSC0003DMT400049665	Potato	nucleus	31.65	26.4
PGSC0003DMT400054407	Potato	nucleus	27.61	26.11
PGSC0003DMT400028190	Potato	nucleus	25.25	25.95
PGSC0003DMT400003082	Potato	nucleus	24.24	25.53
Os05t0415400-01	Rice	extracellular, nucleus, plastid	26.26	25.16
PGSC0003DMT400049124	Potato	nucleus	18.52	22.0
PGSC0003DMT400080307	Potato	nucleus	27.95	21.45
PGSC0003DMT400003343	Potato	nucleus	27.27	20.45
PGSC0003DMT400047021	Potato	nucleus	25.59	18.81
PGSC0003DMT400048237	Potato	nucleus	29.63	18.0
Os02t0745300-00	Rice	plastid	1.01	1.82

Protein Annotations

EntrezGene:102578646	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M1DSS7	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400043393	PGSC:PGSC0003DMG400043393	EnsemblPlants:PGSC0003DMT400093822	PFscan:PS51005	PANTHER:PTHR31719	PANTHER:PTHR31719:SF81
SUPFAM:SSF101941	UniParc:UPI000294E9EE	RefSeq:XP_006367742.1	SEG:seg	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400043393]

Coordinates

chr11:+:37365406..37367196

Molecular Weight (calculated)

34811.4 Da

IEP (calculated)

5.964

GRAVY (calculated)

-1.010

Length

297 amino acids

Sequence
(BLAST)

001: MVGRRDNNFV YPPGYRFCPH DEELILHYLK KKVMNELLPY NIIKDVNLYK YCPHELAENY SILGEKEWYF FTPRARKYPN GERPNRAAGT GYWKATGADK
101: PIIHKNVKVG FRKALVFYEG KPPKGNKTNW IMHEFRVDES RTIKTHASDM RLDDWVLCRI YKKADKSSKA KDDHEQEDSM ILAEVENPIN LAEVENPINL
201: AEVWNPINSA EVENYPYMNS CDEVGRQQSQ PTHQNNQNNY NSHYGARLNY GLNLPPPFPH ENMHYDPNNS NWLDWINNAY DYGNTDTDDL DENQSND

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.