Factsheet for VIT_19s0027g00910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g00880.t01	Wine grape	nucleus	48.47	66.82
VIT_19s0027g00870.t01	Wine grape	nucleus	61.69	65.7
VIT_19s0027g00840.t01	Wine grape	nucleus	62.37	64.79
VIT_19s0027g00860.t01	Wine grape	nucleus	59.66	63.77
VIT_12s0028g00860.t01	Wine grape	nucleus	53.22	52.68
GSMUA_Achr7P00860_001	Banana	nucleus	43.73	49.24
GSMUA_Achr4P23030_001	Banana	nucleus	41.02	48.4
GSMUA_Achr10P...	Banana	cytosol	42.71	47.19
GSMUA_Achr4P32010_001	Banana	nucleus	45.76	47.04
Solyc05g021090.2.1	Tomato	nucleus	43.05	45.52
PGSC0003DMT400003082	Potato	nucleus	43.39	45.39
GSMUA_Achr5P02170_001	Banana	nucleus	46.44	44.63
Zm00001d007850_P001	Maize	nucleus	37.97	44.62
GSMUA_Achr9P10040_001	Banana	nucleus	45.76	44.41
HORVU5Hr1G099470.2	Barley	cytosol	46.78	40.95
TraesCS5D01G421100.1	Wheat	nucleus	45.42	39.3
Zm00001d013151_P001	Maize	cytosol	44.75	39.29
TraesCS5B01G415700.1	Wheat	nucleus	46.1	38.86
EES17466	Sorghum	nucleus	40.0	38.82
EER95852	Sorghum	nucleus	45.08	38.78
TraesCS5A01G411900.1	Wheat	nucleus	45.08	38.78
Zm00001d031164_P001	Maize	nucleus	40.0	38.56
Os03t0777000-01	Rice	nucleus	47.12	38.4
TraesCS5B01G415600.1	Wheat	nucleus	45.42	38.18
HORVU5Hr1G099390.2	Barley	nucleus	37.29	38.06
TraesCS5D01G420800.1	Wheat	nucleus	46.78	37.91
EER93360	Sorghum	nucleus	47.46	37.84
TraesCS4B01G384700.1	Wheat	cytoskeleton, cytosol, nucleus	43.39	37.65
TraesCS5A01G411800.1	Wheat	nucleus	44.75	37.5
Zm00001d018773_P001	Maize	nucleus	45.42	37.43
HORVU5Hr1G099460.1	Barley	nucleus	43.73	37.28
Zm00001d034277_P001	Maize	cytosol, mitochondrion, nucleus	46.1	36.96
TraesCS5A01G411700.1	Wheat	nucleus	46.78	36.6
TraesCS5B01G415400.1	Wheat	nucleus	46.78	36.6
TraesCS5D01G421000.1	Wheat	nucleus	45.42	34.9
VIT_14s0108g00860.t01	Wine grape	nucleus	41.36	34.56
VIT_06s0004g02340.t01	Wine grape	nucleus	20.68	33.89
VIT_01s0026g02360.t01	Wine grape	nucleus	41.69	30.67
VIT_01s0026g02710.t01	Wine grape	nucleus	28.14	29.43
VIT_07s0031g02610.t01	Wine grape	nucleus	28.81	28.91
VIT_06s0004g00020.t01	Wine grape	nucleus	28.14	27.95
VIT_03s0038g03410.t01	Wine grape	nucleus	26.1	27.6
VIT_18s0001g02300.t01	Wine grape	nucleus	27.8	27.42
VIT_19s0014g03290.t01	Wine grape	nucleus	30.85	27.33
VIT_04s0008g00150.t01	Wine grape	nucleus	25.76	27.24
VIT_00s0375g00040.t01	Wine grape	nucleus	28.81	25.68
VIT_19s0014g03300.t01	Wine grape	nucleus	29.15	24.36
VIT_08s0040g02110.t01	Wine grape	nucleus	27.8	23.98
VIT_08s0007g07670.t01	Wine grape	nucleus	27.12	23.88
VIT_06s0004g03080.t01	Wine grape	nucleus	26.78	21.94
VIT_12s0035g02020.t01	Wine grape	nucleus	32.54	21.05

Protein Annotations

EntrezGene:100243956	wikigene:100243956	EntrezGene:100852878	wikigene:100852878	MapMan:15.5.17	Gene3D:3.30.310.150
EMBL:AM483869	ProteinID:CAN64262	ProteinID:CAN64262.1	ProteinID:CBI21752	ProteinID:CBI21752.3	UniProt:D7SWV2
EMBL:FN595234	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093
EntrezGene:LOC100243956	wikigene:LOC100243956	EntrezGene:LOC100852878	wikigene:LOC100852878	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR44543	PANTHER:PTHR44543:SF2	SUPFAM:SSF101941	UniParc:UPI0001BE2230
ArrayExpress:VIT_19s0027g00910	EnsemblPlantsGene:VIT_19s0027g00910	EnsemblPlants:VIT_19s0027g00910.t01	RefSeq:XP_002265591	RefSeq:XP_002265591.2	:

Description

No Description!

Coordinates

chr19:+:20288471..20290073

Molecular Weight (calculated)

33682.7 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.708

Length

295 amino acids

Sequence
(BLAST)

001: MDADKEDDQF LLPGFRFHPT DEELVSFYLL KKIEKKLTAI ELIKQIDIYK YDPWDLAKNS RTVTDKEWYF FCRRGRKYRN SVRPNRVTGS GFWKATGIDK
101: PIYSVEEGHS RGDCIGLKKS LVYYCGSAGK GTKTDWMMHE FRLPADQKNA TLPTAKAADQ EAEVWTLCRI FKRNVPHRRY TPDWREVPAK RNPTNSKPET
201: CDMSPENWEG YVSSGAPVSL HKGKKPVGSH IDEGNPLPAG QVSSIVQGSQ PESCSSSILS NDAREFFAHG NWDEIVSFME LSFDPSSINN FKIMH

Best Arabidopsis Sequence Match ( AT2G43000.1 )
(BLAST)

001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP

Arabidopsis Description

JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.