Factsheet for Solyc04g009440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08790.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082472	Potato	nucleus	97.01	96.37
CDY40732	Canola	cytosol, nucleus, plastid	56.81	66.28
VIT_07s0031g02610.t01	Wine grape	nucleus	64.45	65.99
CDY44788	Canola	cytosol, nucleus, plastid	56.48	64.89
KRH63977	Soybean	nucleus	62.46	64.6
KRH53959	Soybean	nucleus	63.12	64.41
Bra038663.1-P	Field mustard	nucleus	53.16	64.0
CDY41537	Canola	nucleus	53.16	64.0
CDX78352	Canola	cytosol, nucleus, plastid	55.48	63.74
KRH59618	Soybean	nucleus	62.79	63.42
CDX81120	Canola	nucleus	50.5	63.07
GSMUA_Achr10P...	Banana	nucleus	53.16	62.75
CDY31350	Canola	nucleus	55.15	62.64
Bra029201.1-P	Field mustard	cytosol	55.15	62.64
CDY21567	Canola	nucleus	57.81	62.59
CDX84443	Canola	nucleus	52.16	62.3
Bra028645.1-P	Field mustard	nucleus	57.48	62.23
Bra009370.1-P	Field mustard	nucleus	57.48	62.23
CDX69919	Canola	nucleus	57.48	62.23
Solyc06g060230.2.1	Tomato	nucleus	61.13	62.16
Solyc11g017470.1.1	Tomato	nucleus	59.47	61.51
Bra006015.1-P	Field mustard	cytosol, nucleus, plastid	56.81	61.07
KXG33829	Sorghum	nucleus	58.47	60.48
AT5G08790.1	Thale cress	nucleus	56.81	60.42
GSMUA_Achr6P18720_001	Banana	nucleus	53.82	59.12
HORVU1Hr1G063740.1	Barley	nucleus	57.14	58.7
TraesCS1A01G263700.1	Wheat	nucleus	56.81	58.36
Zm00001d042609_P001	Maize	cytosol, mitochondrion, nucleus	57.14	58.31
GSMUA_Achr7P23250_001	Banana	nucleus	51.83	58.21
TraesCS3B01G439600.1	Wheat	nucleus	57.48	58.05
TraesCS3D01G401200.1	Wheat	nucleus	57.14	57.53
TraesCS3A01G406000.1	Wheat	nucleus	57.14	57.53
TraesCS1D01G263800.1	Wheat	nucleus	57.14	57.33
GSMUA_Achr6P25380_001	Banana	nucleus	51.83	56.93
Os01t0884300-01	Rice	nucleus	57.14	56.77
TraesCS1B01G274300.1	Wheat	nucleus	56.48	56.48
CDY39846	Canola	mitochondrion	54.49	55.78
GSMUA_Achr6P17720_001	Banana	nucleus	51.16	53.1
AT5G63790.2	Thale cress	cytosol	55.81	52.17
Zm00001d038221_P001	Maize	plastid	57.81	51.33
KXG22031	Sorghum	nucleus	56.81	50.15
Os11t0184900-02	Rice	nucleus	53.16	48.63
HORVU4Hr1G017430.7	Barley	nucleus	52.16	47.29
TraesCS4B01G098200.1	Wheat	nucleus	52.16	47.01
TraesCS4D01G094400.1	Wheat	nucleus	52.16	46.87
TraesCS4A01G219700.1	Wheat	nucleus	52.16	46.87
GSMUA_Achr3P18990_001	Banana	plastid	51.83	46.85
Zm00001d000112_P001	Maize	nucleus	52.82	44.29
OQU83033	Sorghum	nucleus	52.49	41.15
Solyc04g005610.2.1	Tomato	nucleus	35.55	38.91
Solyc05g007770.2.1	Tomato	nucleus	34.88	37.23
Solyc07g063410.2.1	Tomato	nucleus	41.2	34.83
Solyc07g063420.2.1	Tomato	nucleus	37.87	34.65
Solyc12g013620.1.1	Tomato	nucleus	39.2	33.81
Solyc10g006880.2.1	Tomato	nucleus	39.53	33.52
Solyc10g083450.1.1	Tomato	cytosol	30.56	31.83
Solyc11g065540.1.1	Tomato	nucleus	31.23	30.42
Solyc02g061780.2.1	Tomato	nucleus	23.92	29.51
Solyc05g021090.2.1	Tomato	nucleus	26.58	28.67
Solyc10g055760.1.1	Tomato	cytosol	25.91	27.56
Solyc02g069960.2.1	Tomato	nucleus	28.24	27.42
Solyc07g045030.2.1	Tomato	nucleus	29.57	26.89
Solyc02g087920.2.1	Tomato	nucleus	29.57	23.24
Solyc05g007550.1.1	Tomato	nucleus	29.24	22.56
Solyc01g102740.2.1	Tomato	nucleus	30.23	22.03
Solyc07g006840.1.1	Tomato	nucleus	29.57	18.43

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:AGJ52118.1	EMBL:AY498713	EMBL:EU670750	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EMBL:KC447280	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31719	PANTHER:PTHR31719:SF16	UniProt:Q6RH27
SUPFAM:SSF101941	EnsemblPlantsGene:Solyc04g009440.2	EnsemblPlants:Solyc04g009440.2.1	UniParc:UPI0000233246	SEG:seg	:

Description

NAC domain protein [Source:UniProtKB/TrEMBL;Acc:Q6RH27]

Coordinates

chr4:+:2856469..2858639

Molecular Weight (calculated)

34837.0 Da

IEP (calculated)

7.893

GRAVY (calculated)

-0.837

Length

301 amino acids

Sequence
(BLAST)

001: MNKGANGNQQ LELPAGFRFH PTDDELVQHY LCRKCAGQSI AVSIIAEIDL YKFDPWQLPE KALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD
101: KPVGKPKTLG IKKALVFYAG KAPRGIKTNW IMHEYRLANV DRSAGKNNNL RLDDWVLCRI YNKKGTLEKH YNVDNKETTS FGEFDEEIKP KILPTQLAPM
201: PPRPRSTPAN DYFYFESSES MTRMHTTNSS SGSEHVLSPC DKEVQSAPKW DEDHRNTLDF QLNYLDGLLN EPFETQMQQQ ICNFDQFNNF QDMFLYMQKP
301: Y

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.