Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 67.91 | 71.37 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 70.9 | 69.34 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 61.19 | 59.85 |
| KRH17977 | Soybean | nucleus | 58.96 | 58.96 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 64.55 | 57.86 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 54.48 | 57.71 |
| CDY40894 | Canola | nucleus | 55.6 | 57.31 |
| Bra008309.1-P | Field mustard | cytosol, nucleus, plastid | 55.22 | 56.92 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 55.22 | 56.92 |
| KRH16387 | Soybean | nucleus | 59.33 | 56.79 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 60.82 | 56.21 |
| Bra033239.1-P | Field mustard | nucleus | 59.7 | 56.14 |
| CDX90054 | Canola | nucleus | 59.7 | 56.14 |
| Solyc11g017470.1.1 | Tomato | nucleus | 60.82 | 56.01 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 53.73 | 55.81 |
| Solyc06g060230.2.1 | Tomato | nucleus | 61.57 | 55.74 |
| PGSC0003DMT400045294 | Potato | nucleus | 61.57 | 55.74 |
| AT1G01720.1 | Thale cress | nucleus | 60.07 | 55.71 |
| PGSC0003DMT400023917 | Potato | nucleus | 60.45 | 55.67 |
| CDY15158 | Canola | nucleus | 59.33 | 55.59 |
| KRH64668 | Soybean | nucleus | 61.57 | 55.0 |
| Bra038663.1-P | Field mustard | nucleus | 51.12 | 54.8 |
| CDY41537 | Canola | nucleus | 51.12 | 54.8 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 59.33 | 54.08 |
| CDX84443 | Canola | nucleus | 50.75 | 53.97 |
| KRH53247 | Soybean | nucleus | 60.07 | 53.85 |
| KRH63977 | Soybean | nucleus | 58.21 | 53.61 |
| CDY31350 | Canola | nucleus | 52.99 | 53.58 |
| Bra029201.1-P | Field mustard | cytosol | 52.99 | 53.58 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 52.24 | 53.44 |
| KRH59618 | Soybean | nucleus | 59.33 | 53.36 |
| KRH53959 | Soybean | nucleus | 58.58 | 53.22 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 51.87 | 53.05 |
| Bra028645.1-P | Field mustard | nucleus | 54.1 | 52.16 |
| GSMUA_Achr7P21770_001 | Banana | nucleus | 38.81 | 52.0 |
| Solyc04g009440.2.1 | Tomato | nucleus | 58.21 | 51.83 |
| CDX84050 | Canola | nucleus | 36.94 | 51.3 |
| PGSC0003DMT400082472 | Potato | nucleus | 57.84 | 51.16 |
| Bra009370.1-P | Field mustard | nucleus | 52.99 | 51.08 |
| CDX69919 | Canola | nucleus | 52.99 | 51.08 |
| CDY21567 | Canola | nucleus | 52.99 | 51.08 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 53.36 | 51.07 |
| AT5G08790.1 | Thale cress | nucleus | 53.73 | 50.88 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 63.06 | 50.75 |
| CDX81120 | Canola | nucleus | 45.52 | 50.62 |
| CDY39846 | Canola | mitochondrion | 53.73 | 48.98 |
| Os11t0184900-02 | Rice | nucleus | 59.33 | 48.33 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 60.07 | 48.2 |
| HORVU4Hr1G017430.7 | Barley | nucleus | 59.7 | 48.19 |
| TraesCS4D01G094400.1 | Wheat | nucleus | 60.07 | 48.06 |
| TraesCS4A01G219700.1 | Wheat | nucleus | 60.07 | 48.06 |
| Zm00001d000112_P001 | Maize | nucleus | 60.82 | 45.4 |
| GSMUA_Achr4P02390_001 | Banana | nucleus | 44.4 | 45.08 |
| AT5G63790.2 | Thale cress | cytosol | 53.73 | 44.72 |
| GSMUA_Achr6P32330_001 | Banana | cytosol | 44.78 | 44.44 |
| OQU83033 | Sorghum | nucleus | 60.82 | 42.45 |
| GSMUA_Achr5P07590_001 | Banana | nucleus | 45.15 | 41.72 |
| GSMUA_Achr7P21780_001 | Banana | nucleus | 46.27 | 41.61 |
| GSMUA_Achr4P10310_001 | Banana | nucleus | 43.66 | 39.93 |
| GSMUA_Achr10P... | Banana | cytosol | 43.66 | 38.49 |
| GSMUA_Achr9P19520_001 | Banana | nucleus | 43.66 | 35.89 |
| GSMUA_Achr10P... | Banana | nucleus | 40.3 | 35.76 |
| GSMUA_Achr4P02380_001 | Banana | nucleus | 42.91 | 34.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.42 | 33.95 |
| GSMUA_Achr1P08860_001 | Banana | nucleus | 44.78 | 33.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.34 | 32.18 |
| GSMUA_Achr6P32320_001 | Banana | nucleus | 41.42 | 32.17 |
| GSMUA_Achr5P19060_001 | Banana | nucleus | 29.1 | 31.97 |
| GSMUA_Achr1P02710_001 | Banana | nucleus | 32.09 | 31.62 |
| GSMUA_Achr11P... | Banana | nucleus | 30.6 | 31.3 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 30.22 | 30.92 |
| GSMUA_Achr3P18010_001 | Banana | nucleus | 42.16 | 30.71 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 28.36 | 30.4 |
| GSMUA_Achr5P17060_001 | Banana | nucleus | 31.34 | 29.79 |
| GSMUA_Achr10P... | Banana | cytosol | 29.48 | 29.59 |
| GSMUA_Achr11P... | Banana | nucleus | 33.96 | 28.62 |
| GSMUA_Achr3P14720_001 | Banana | nucleus | 30.6 | 28.37 |
| GSMUA_Achr9P04960_001 | Banana | nucleus | 41.79 | 28.21 |
| GSMUA_Achr10P... | Banana | nucleus | 34.33 | 28.13 |
| GSMUA_Achr7P04030_001 | Banana | nucleus | 29.85 | 28.07 |
| GSMUA_Achr3P00560_001 | Banana | nucleus | 29.1 | 27.96 |
| GSMUA_Achr1P18110_001 | Banana | cytosol, nucleus, plastid | 22.39 | 27.65 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 29.1 | 27.18 |
| GSMUA_Achr10P... | Banana | nucleus | 33.58 | 26.55 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 29.85 | 26.06 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 29.48 | 25.99 |
| GSMUA_Achr3P21690_001 | Banana | nucleus | 34.33 | 25.84 |
| GSMUA_Achr7P23650_001 | Banana | nucleus | 33.21 | 25.57 |
| GSMUA_Achr11P... | Banana | nucleus | 31.72 | 25.37 |
| GSMUA_Achr6P02680_001 | Banana | nucleus | 31.72 | 22.08 |
| GSMUA_Achr10P... | Banana | cytosol | 31.34 | 19.91 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G23250_001 |
| EnsemblPlants:GSMUA_Achr7P23250_001 | EnsemblPlants:GSMUA_Achr7T23250_001 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0TK11 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 | PANTHER:PTHR31719:SF16 | SUPFAM:SSF101941 |
| UniParc:UPI000295A72A | : | : | : | : | : |
Description
NAC domain-containing protein 48 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23250_001]
Coordinates
chr7:+:25537108..25538614
Molecular Weight (calculated)
30518.0 Da
IEP (calculated)
9.351
GRAVY (calculated)
-0.721
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MIADRREPAM NGGGLQLPPG FRFHPTDEEL VMHYLRRKSA GLPVAVPIVA ELDLYKYDPW QLPGMASYGE KEWYFFSPRE RKYPNGSRPN RAAGSGYWKA
101: TGADKPVGAP KPVAIKKALV FYSGKAPRGH KSNWIMHEYR LADVDRSPRR KNSLRLDDWV LCRIYNKKGS NASDKFGTRD RKPAGSRLHA DSSCSEHVLS
201: PEFTCEREVQ SQPRWRPTEW DWAFAPAANS VFPHPEPGLL SSEFGDSFQD ILVYLENPFE PYAHYVST
101: TGADKPVGAP KPVAIKKALV FYSGKAPRGH KSNWIMHEYR LADVDRSPRR KNSLRLDDWV LCRIYNKKGS NASDKFGTRD RKPAGSRLHA DSSCSEHVLS
201: PEFTCEREVQ SQPRWRPTEW DWAFAPAANS VFPHPEPGLL SSEFGDSFQD ILVYLENPFE PYAHYVST
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.