Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026353.1-P | Field mustard | nucleus | 97.0 | 97.0 |
| CDX89253 | Canola | nucleus | 97.0 | 97.0 |
| CDY26031 | Canola | cytosol | 44.0 | 87.42 |
| CDY29836 | Canola | nucleus | 84.0 | 84.0 |
| CDX92828 | Canola | nucleus | 83.33 | 83.33 |
| AT4G27410.3 | Thale cress | nucleus | 86.67 | 82.8 |
| CDY26032 | Canola | cytosol | 43.67 | 81.37 |
| CDX82432 | Canola | nucleus | 53.0 | 64.37 |
| VIT_19s0014g03290.t01 | Wine grape | nucleus | 65.33 | 58.86 |
| CDX75833 | Canola | nucleus | 56.67 | 57.24 |
| CDY21844 | Canola | nucleus | 59.33 | 56.15 |
| CDY20109 | Canola | nucleus | 59.33 | 56.15 |
| CDY22671 | Canola | nucleus | 37.0 | 55.78 |
| CDX82430 | Canola | nucleus | 36.67 | 55.28 |
| PGSC0003DMT400039670 | Potato | nucleus | 64.67 | 55.27 |
| CDX98560 | Canola | nucleus | 58.67 | 55.0 |
| CDX97674 | Canola | nucleus | 58.67 | 54.83 |
| Solyc12g013620.1.1 | Tomato | nucleus | 63.67 | 54.73 |
| KRH27201 | Soybean | nucleus | 62.33 | 54.2 |
| KRH22137 | Soybean | nucleus | 61.67 | 53.94 |
| CDY41537 | Canola | nucleus | 36.67 | 44.0 |
| CDY40894 | Canola | nucleus | 37.67 | 43.46 |
| CDX84443 | Canola | nucleus | 36.33 | 43.25 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 37.0 | 43.02 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 37.0 | 42.69 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 37.0 | 42.37 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 36.33 | 41.6 |
| CDY31350 | Canola | nucleus | 36.67 | 41.51 |
| CDX90054 | Canola | nucleus | 39.33 | 41.4 |
| CDY42902 | Canola | nucleus | 38.33 | 41.07 |
| CDY15158 | Canola | nucleus | 39.0 | 40.91 |
| CDX95931 | Canola | cytosol | 36.67 | 40.74 |
| CDY40930 | Canola | cytosol | 36.67 | 40.74 |
| CDX81120 | Canola | nucleus | 32.33 | 40.25 |
| CDY07348 | Canola | nucleus | 36.33 | 40.22 |
| CDY51500 | Canola | nucleus | 36.33 | 40.07 |
| CDY21567 | Canola | nucleus | 37.0 | 39.93 |
| CDX69919 | Canola | nucleus | 37.0 | 39.93 |
| CDY69545 | Canola | nucleus | 39.67 | 38.14 |
| CDY53806 | Canola | nucleus | 39.67 | 37.42 |
| CDY39846 | Canola | mitochondrion | 36.67 | 37.41 |
| CDY12886 | Canola | nucleus | 39.67 | 37.07 |
| CDY40970 | Canola | nucleus | 39.67 | 36.96 |
| CDY50880 | Canola | nucleus | 40.0 | 36.92 |
| CDX84050 | Canola | nucleus | 23.0 | 35.75 |
| CDY56427 | Canola | nucleus | 38.67 | 35.47 |
| CDY29983 | Canola | nucleus | 41.0 | 34.65 |
| CDY14865 | Canola | nucleus | 31.67 | 34.3 |
| CDY30373 | Canola | nucleus | 31.67 | 34.3 |
| CDX97675 | Canola | nucleus | 38.67 | 33.82 |
| CDY53654 | Canola | nucleus | 30.67 | 32.97 |
| CDY55499 | Canola | nucleus | 30.67 | 32.97 |
| CDY20131 | Canola | nucleus | 38.33 | 32.86 |
| CDX98562 | Canola | nucleus | 38.0 | 31.75 |
| CDY47486 | Canola | nucleus | 27.67 | 29.75 |
| CDY47485 | Canola | nucleus | 27.67 | 29.75 |
| CDY26794 | Canola | nucleus | 27.67 | 29.75 |
| CDY39487 | Canola | nucleus | 27.33 | 29.18 |
| CDY02222 | Canola | nucleus | 27.33 | 29.18 |
| CDY64562 | Canola | nucleus | 28.0 | 28.57 |
| CDY43391 | Canola | nucleus | 27.67 | 28.14 |
| CDX67438 | Canola | nucleus | 31.33 | 28.06 |
| CDY11662 | Canola | nucleus | 31.0 | 27.76 |
| CDY24238 | Canola | nucleus | 28.33 | 27.69 |
| CDX82569 | Canola | nucleus | 27.33 | 27.15 |
| CDX71329 | Canola | endoplasmic reticulum, extracellular | 27.67 | 27.04 |
| CDY60122 | Canola | nucleus | 29.0 | 26.61 |
| CDY31385 | Canola | cytosol | 27.67 | 26.02 |
| CDY65270 | Canola | nucleus | 34.0 | 25.82 |
| CDY46433 | Canola | nucleus | 33.67 | 24.51 |
| CDY01755 | Canola | nucleus | 31.67 | 23.93 |
| CDX95910 | Canola | nucleus | 32.0 | 23.47 |
| CDY17437 | Canola | nucleus | 31.33 | 23.15 |
| CDY15835 | Canola | nucleus | 31.0 | 22.85 |
| CDY04129 | Canola | nucleus | 31.0 | 22.79 |
| CDY23551 | Canola | nucleus | 28.33 | 22.67 |
| CDY09368 | Canola | nucleus | 30.67 | 22.66 |
| CDY03050 | Canola | nucleus | 30.67 | 22.22 |
| CDY17595 | Canola | nucleus | 30.67 | 22.06 |
| CDY42810 | Canola | nucleus | 31.33 | 18.43 |
| CDX83510 | Canola | nucleus | 31.0 | 18.24 |
| CDY54324 | Canola | extracellular | 8.33 | 9.03 |
| CDY16201 | Canola | plastid | 7.67 | 8.75 |
| CDX82429 | Canola | plastid | 1.0 | 2.8 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078GXF4 | UniProt:A0A078GXF4 | EnsemblPlants:CDY29303 | ProteinID:CDY29303 |
| ProteinID:CDY29303.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00042260001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR44908 |
| SUPFAM:SSF101941 | UniParc:UPI0004EE870B | SEG:seg | : | : | : |
Description
BnaC01g19550DBnaC01g19550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXF4]
Coordinates
chrLK032234:-:344989..346772
Molecular Weight (calculated)
33809.7 Da
IEP (calculated)
8.550
GRAVY (calculated)
-0.620
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQIIGDID LYKFDPWDLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIIMSEGHR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKSSGSQRQA VASPVQACLK DHSTNMSSSP SSSSQLDDVL
201: DSFPEMKDRS FDLPRMNSLR TILNGSFEWA SLAGLNPMPE LAPMTNGLSN YGGYHAFQSA ESGCRSSQVD QEQNSTELTQ NFGYSSSGFG HSGQMYEFRQ
101: DKIIMSEGHR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKSSGSQRQA VASPVQACLK DHSTNMSSSP SSSSQLDDVL
201: DSFPEMKDRS FDLPRMNSLR TILNGSFEWA SLAGLNPMPE LAPMTNGLSN YGGYHAFQSA ESGCRSSQVD QEQNSTELTQ NFGYSSSGFG HSGQMYEFRQ
001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ
Arabidopsis Description
RD26NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JIU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.