Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89253 | Canola | nucleus | 83.44 | 87.33 |
| Bra026353.1-P | Field mustard | nucleus | 83.44 | 87.33 |
| CDY29303 | Canola | nucleus | 82.8 | 86.67 |
| AT1G52890.1 | Thale cress | nucleus | 60.83 | 60.25 |
| VIT_19s0014g03290.t01 | Wine grape | nucleus | 62.1 | 58.56 |
| AT3G15500.1 | Thale cress | nucleus | 58.6 | 58.04 |
| PGSC0003DMT400039670 | Potato | nucleus | 63.69 | 56.98 |
| Solyc12g013620.1.1 | Tomato | nucleus | 62.74 | 56.45 |
| KRH27201 | Soybean | nucleus | 60.83 | 55.36 |
| KRH22137 | Soybean | nucleus | 59.87 | 54.81 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 35.99 | 44.66 |
| AT1G01720.1 | Thale cress | nucleus | 38.22 | 41.52 |
| AT5G08790.1 | Thale cress | nucleus | 36.94 | 40.99 |
| AT1G69490.1 | Thale cress | nucleus | 33.76 | 39.55 |
| AT1G61110.1 | Thale cress | nucleus | 38.22 | 37.15 |
| AT1G52880.1 | Thale cress | nucleus | 35.99 | 35.31 |
| AT5G63790.2 | Thale cress | cytosol | 35.35 | 34.47 |
| AT3G04070.1 | Thale cress | nucleus | 39.17 | 34.26 |
| AT2G43000.1 | Thale cress | nucleus | 29.62 | 33.82 |
| AT3G15510.1 | Thale cress | nucleus | 37.58 | 32.42 |
| AT2G17040.1 | Thale cress | nucleus | 26.43 | 30.07 |
| AT3G12910.1 | Thale cress | nucleus | 27.39 | 28.38 |
| AT5G39820.1 | Thale cress | nucleus | 30.25 | 28.19 |
| AT1G26870.1 | Thale cress | nucleus | 32.8 | 24.64 |
| AT2G02450.2 | Thale cress | nucleus | 29.62 | 22.46 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EntrezGene:828849 | ProteinID:AEE85335.1 | ArrayExpress:AT4G27410 | EnsemblPlantsGene:AT4G27410 |
| RefSeq:AT4G27410 | TAIR:AT4G27410 | RefSeq:AT4G27410-TAIR-G | EnsemblPlants:AT4G27410.3 | TAIR:AT4G27410.3 | Unigene:At.20412 |
| UniProt:F4JIU9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045893 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | RefSeq:NP_001078452.1 | PFAM:PF02365 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000258 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003015 | PO:PO:0004507 |
| PO:PO:0005679 | PO:PO:0006203 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025257 | PO:PO:0025281 |
| PFscan:PS51005 | PANTHER:PTHR44908 | Symbol:RD26 | SUPFAM:SSF101941 | UniParc:UPI00000AAF69 | SEG:seg |
Description
RD26NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JIU9]
Coordinates
chr4:-:13707900..13709013
Molecular Weight (calculated)
35148.1 Da
IEP (calculated)
8.638
GRAVY (calculated)
-0.589
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP SKQTCFTFVG EYNCNYLGKA LFGEKEWYFF SPRDRKYPNG
101: SRPNRVAGSG YWKATGTDKI ITADGRRVGI KKALVFYAGK APKGTKTNWI MHEYRLIEHS RSHGSSKLDD WVLCRIYKKT SGSQRQAVTP VQACREEHST
201: NGSSSSSSSQ LDDVLDSFPE IKDQSFNLPR MNSLRTILNG NFDWASLAGL NPIPELAPTN GLPSYGGYDA FRAAEGEAES GHVNRQQNSS GLTQSFGYSS
301: SGFGVSGQTF EFRQ
101: SRPNRVAGSG YWKATGTDKI ITADGRRVGI KKALVFYAGK APKGTKTNWI MHEYRLIEHS RSHGSSKLDD WVLCRIYKKT SGSQRQAVTP VQACREEHST
201: NGSSSSSSSQ LDDVLDSFPE IKDQSFNLPR MNSLRTILNG NFDWASLAGL NPIPELAPTN GLPSYGGYDA FRAAEGEAES GHVNRQQNSS GLTQSFGYSS
301: SGFGVSGQTF EFRQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.