Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G094170.1 | Barley | nucleus | 52.42 | 93.7 |
| HORVU2Hr1G004130.1 | Barley | cytosol, nucleus | 82.82 | 67.14 |
| TraesCS6A01G057400.1 | Wheat | nucleus | 71.81 | 56.21 |
| TraesCS6B01G075200.1 | Wheat | nucleus | 69.6 | 55.44 |
| Os07t0225300-01 | Rice | nucleus | 57.71 | 47.46 |
| EER96087 | Sorghum | nucleus | 60.35 | 47.24 |
| HORVU1Hr1G021800.3 | Barley | cytosol, nucleus | 37.44 | 46.2 |
| Zm00001d019207_P001 | Maize | nucleus | 60.79 | 46.0 |
| Zm00001d005208_P001 | Maize | nucleus | 60.35 | 45.21 |
| HORVU3Hr1G032680.1 | Barley | nucleus | 40.97 | 45.15 |
| TraesCS6D01G059300.1 | Wheat | nucleus, plastid | 70.04 | 45.04 |
| GSMUA_Achr4P02390_001 | Banana | nucleus | 50.66 | 43.56 |
| GSMUA_Achr5P07590_001 | Banana | nucleus | 53.3 | 41.72 |
| GSMUA_Achr6P32330_001 | Banana | cytosol | 48.46 | 40.74 |
| GSMUA_Achr4P10310_001 | Banana | nucleus | 51.54 | 39.93 |
| VIT_06s0004g00020.t01 | Wine grape | nucleus | 51.98 | 39.73 |
| HORVU5Hr1G111590.2 | Barley | nucleus | 57.27 | 39.39 |
| GSMUA_Achr7P21780_001 | Banana | nucleus | 51.1 | 38.93 |
| GSMUA_Achr10P... | Banana | cytosol | 50.22 | 37.5 |
| HORVU1Hr1G063740.1 | Barley | nucleus | 46.26 | 35.84 |
| HORVU4Hr1G017430.7 | Barley | nucleus | 46.7 | 31.93 |
| HORVU6Hr1G075830.1 | Barley | nucleus | 36.12 | 31.42 |
| HORVU3Hr1G014140.3 | Barley | nucleus | 45.37 | 29.51 |
| HORVU4Hr1G051290.1 | Barley | nucleus | 44.93 | 28.73 |
| HORVU2Hr1G039640.2 | Barley | nucleus | 47.14 | 26.42 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 33.04 | 25.95 |
| HORVU6Hr1G019380.2 | Barley | plastid | 46.7 | 25.85 |
| HORVU2Hr1G017470.1 | Barley | nucleus | 43.17 | 25.45 |
| HORVU5Hr1G045650.7 | Barley | plastid | 42.73 | 23.72 |
| HORVU5Hr1G099470.2 | Barley | cytosol | 33.92 | 22.85 |
| HORVU4Hr1G081450.1 | Barley | nucleus | 35.24 | 22.47 |
| HORVU5Hr1G099460.1 | Barley | nucleus | 33.92 | 22.25 |
| HORVU4Hr1G081430.1 | Barley | cytosol, nucleus | 35.24 | 21.62 |
| HORVU4Hr1G081440.3 | Barley | nucleus | 35.24 | 21.05 |
| HORVU2Hr1G011390.1 | Barley | nucleus | 33.48 | 20.99 |
| HORVU2Hr1G011360.1 | Barley | nucleus | 33.48 | 20.99 |
| HORVU2Hr1G011370.1 | Barley | nucleus | 34.36 | 20.16 |
| HORVU0Hr1G026330.2 | Barley | nucleus | 36.12 | 19.71 |
| HORVU2Hr1G017460.4 | Barley | nucleus | 36.12 | 19.52 |
| HORVU1Hr1G064300.1 | Barley | nucleus | 33.48 | 19.34 |
| HORVU7Hr1G076250.1 | Barley | nucleus | 32.6 | 18.93 |
| HORVU3Hr1G090440.4 | Barley | cytosol, nucleus, peroxisome | 33.04 | 18.29 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | UniProt:A0A287Q4A0 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU4Hr1G089660 | EnsemblPlants:HORVU4Hr1G089660.1 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 | PANTHER:PTHR31719:SF80 | SUPFAM:SSF101941 | UniParc:UPI000B466B2C |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:643378290..643379142
Molecular Weight (calculated)
25794.4 Da
IEP (calculated)
10.770
GRAVY (calculated)
-0.930
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: DGGGAPRGGE WQDGEAELSL PPGFRFHPTD EELVGDYLCA RAAGRALPAH VIAEVDMYRH DPWELPERAL SGEREWYFFT PRDRKYPNGS RPSRAAGGGY
101: WKAIGADRPV ARAGRTVGVK KSLVFYHGRP GAAVKTDWIM HEYRLAGAEG RAGRKRDGAS IRLDDWVLCR LYNKKNQWEK MQRQRWEAAV KAAASQSPWG
201: ARRGRRSPMS TTMHSRSWTR CRRRSRE
101: WKAIGADRPV ARAGRTVGVK KSLVFYHGRP GAAVKTDWIM HEYRLAGAEG RAGRKRDGAS IRLDDWVLCR LYNKKNQWEK MQRQRWEAAV KAAASQSPWG
201: ARRGRRSPMS TTMHSRSWTR CRRRSRE
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.