Factsheet for TraesCS3D01G333100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 22082019

gfp PMID: 22082019 doi

Y Tang, M Liu, S Gao, Z Zhang, X Zhao, C Zhao, F Zhang, X Chen

Beijing Engineering and Technique Research Center of Hybrid Wheat, Beijing Academy of Agricultural and Forestry Science, Beijing 100097, People's Republic of China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G339600.1	Wheat	nucleus	97.15	97.77
TraesCS3B01G371200.1	Wheat	nucleus	96.2	97.44
Os01t0816100-01	Rice	nucleus	74.05	73.58
EES03797	Sorghum	nucleus	71.52	71.52
Zm00001d012527_P001	Maize	cytosol, mitochondrion, nucleus	68.67	70.45
GSMUA_Achr4P02390_001	Banana	nucleus	51.58	61.74
GSMUA_Achr5P07590_001	Banana	nucleus	53.8	58.62
GSMUA_Achr7P21780_001	Banana	nucleus	54.11	57.38
GSMUA_Achr4P10310_001	Banana	nucleus	51.9	55.97
TraesCS5D01G481200.1	Wheat	nucleus	55.7	54.15
VIT_06s0004g00020.t01	Wine grape	nucleus	50.0	53.2
GSMUA_Achr10P...	Banana	cytosol	50.0	51.97
GSMUA_Achr6P32330_001	Banana	cytosol	39.56	46.3
TraesCS6D01G059300.1	Wheat	nucleus, plastid	50.63	45.33
TraesCS1D01G263800.1	Wheat	nucleus	39.24	41.33
TraesCS3D01G401200.1	Wheat	nucleus	38.92	41.14
TraesCS4D01G094400.1	Wheat	nucleus	38.29	36.12
TraesCS3D01G170000.1	Wheat	nucleus	34.81	35.71
TraesCS2D01G101400.1	Wheat	nucleus	38.29	34.08
TraesCS4D01G175700.1	Wheat	nucleus	37.34	33.05
TraesCS5D01G148800.1	Wheat	nucleus	35.76	31.92
TraesCS3D01G078900.1	Wheat	nucleus	35.13	31.44
TraesCS2D01G214100.1	Wheat	nucleus	37.34	29.57
TraesCS2D01G101300.1	Wheat	nucleus	29.11	29.21
TraesCS6D01G096300.1	Wheat	nucleus	37.03	28.47
TraesCS7D01G535300.1	Wheat	cytosol, nucleus, plastid	25.95	27.52
TraesCS2D01G061600.1	Wheat	nucleus	28.16	24.72
TraesCS5D01G421100.1	Wheat	nucleus	26.27	24.34
TraesCS6D01G286300.1	Wheat	nucleus	29.43	23.85
TraesCS4D01G325700.1	Wheat	nucleus	25.63	23.34
TraesCS1D01G261800.1	Wheat	nucleus	28.48	23.14
TraesCS5D01G420800.1	Wheat	nucleus	26.58	23.08
TraesCS2D01G061500.1	Wheat	nucleus	28.16	23.0
TraesCS4D01G325800.1	Wheat	nucleus	25.63	22.88
TraesCS5D01G344100.1	Wheat	nucleus	27.22	22.57
TraesCS7D01G315100.1	Wheat	nucleus	27.85	22.56
TraesCS5D01G239600.1	Wheat	nucleus	27.85	22.34
TraesCS5D01G472600.1	Wheat	nucleus	26.27	21.78
TraesCS5D01G421000.1	Wheat	nucleus	26.27	21.61
TraesCS3D01G398200.1	Wheat	nucleus	27.22	20.98

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31719	PANTHER:PTHR31719:SF80	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS3D01G333100	EnsemblPlants:TraesCS3D01G333100.1	SEG:seg

Description

No Description!

Coordinates

chr3D:-:445036951..445038452

Molecular Weight (calculated)

35132.7 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.590

Length

316 amino acids

Sequence
(BLAST)

001: MMTAMVKAES TTAAAAAEGS SGRRDAEAEL NLPPGFRFHP TDDELVVHYL CRKVAGQPQP VPIIAEVDLY KFNPWDLPER ALFGSREWYF FTPRDRKYPN
101: GSRPNRSAGT GYWKATGADK PVAPKESGGR TVGIKKALVF YSGRAPRGVK TDWIMHEYRI AEADRAPGKK GSLKLDEWVL CRLYNKKNNW EKLKVEQDMA
201: VEAGPNGEVM DALATDAMSD SFQTHDSSEI DSASGLQQHG FMDMAQGQPR GGMVTVKEDS DWFTGLSMDD LQTCYMNMGQ MVNPATMPGQ NGSGYLQPMS
301: SPQMMRPMWQ TILPPF

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.