Factsheet for Solyc12g088740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g013620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	Solyc12g013620.1.1	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039849	Potato	nucleus	95.38	95.38
KRH05664	Soybean	nucleus	12.27	70.25
Solyc04g078680.2.1	Tomato	nucleus	59.02	56.65
VIT_18s0001g10260.t01	Wine grape	nucleus	50.94	48.09
KRH52013	Soybean	nucleus	43.15	42.23
KRH61306	Soybean	nucleus	38.96	41.28
Bra027467.1-P	Field mustard	nucleus	23.95	40.49
CDY43590	Canola	nucleus	24.24	39.91
KRH61311	Soybean	nucleus	42.14	39.78
CDY32973	Canola	nucleus	23.52	39.76
CDY17114	Canola	nucleus	29.29	38.23
CDY22376	Canola	nucleus	31.75	35.77
Bra033652.1-P	Field mustard	nucleus	31.75	35.77
CDX71531	Canola	nucleus	32.47	35.32
AT1G45180.3	Thale cress	nucleus	32.76	35.19
CDY17061	Canola	nucleus	30.3	34.65
CDY43220	Canola	nucleus	30.3	34.48
AT5G42940.1	Thale cress	nucleus	34.34	34.44
Bra014043.1-P	Field mustard	nucleus	27.13	32.64
Solyc01g107940.2.1	Tomato	nucleus	31.17	30.55
Solyc01g107930.2.1	Tomato	nucleus	31.46	30.36
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	30.88	29.48
Solyc12g040390.1.1	Tomato	nucleus, plastid	11.98	27.21
Solyc12g010500.1.1	Tomato	nucleus	6.93	26.82
Solyc03g118840.2.1	Tomato	nucleus	13.56	24.29
Solyc11g062260.1.1	Tomato	nucleus	8.51	23.98
Solyc05g008840.1.1	Tomato	nucleus, plastid	7.22	22.73
Solyc09g007530.2.1	Tomato	nucleus	17.6	22.51
Solyc12g019190.1.1	Tomato	mitochondrion	7.07	22.27
Solyc12g014070.1.1	Tomato	nucleus	16.59	21.5
Solyc03g026150.2.1	Tomato	nucleus	7.22	21.1
Solyc08g006460.2.1	Tomato	nucleus	16.16	21.09
Solyc10g007140.2.1	Tomato	nucleus	15.44	20.62
Solyc12g019200.1.1	Tomato	mitochondrion	6.49	20.45
Solyc12g096420.1.1	Tomato	nucleus	16.16	20.33
Solyc09g007620.1.1	Tomato	nucleus	3.9	15.43
Solyc01g087060.2.1	Tomato	nucleus	8.23	15.41
Solyc02g005480.2.1	Tomato	nucleus	5.77	14.93
Solyc07g062720.1.1	Tomato	nucleus	15.44	13.81

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4DGU5	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc12g088740.1
EnsemblPlants:Solyc12g088740.1.1	UniParc:UPI0002769459	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:63995440..63998833

Molecular Weight (calculated)

75335.1 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.651

Length

693 amino acids

Sequence
(BLAST)

001: MQGQQNTVGS LQETLGFNHG STPSEGGVDQ QICWSNLQNS AQNHLPDYMV SSNATDIPFF NPMSQERQNV TRGSLGESSS SIAPNSASWS EQKADHGWSS
101: AMTTYNGPSL ICNEQQCGSS NIMSLNDFFS QGSSSSTIPH EINGNPAFEG RSDNNDDGCQ VMECTPYNSV RPGKERMSSA CTYLGNGCST DDSGDGRPES
201: SSDSRRFCKR KTLEGYLAQS SGSGSSDYIP LAENSIWHSG TASHSMSTGA NISAPTESVR SINMSEHVIP RLGLTMGGAV AVTPVGTPAS RSAESSHRNF
301: RVRIDGSPQQ DYLPSNIFPD VDNVGNVNRS SEQQLPELLP NIPLDLRSVP AADSGNTQRQ PVVMHASSLH RRAQTRWSSA SSSRTGSSSS SARERNSVTF
401: EEPNSRIVSR NISQHPMFIP STNGRNLNQN PASLNLAGRN VSVAGNVASS SGVQSSSPTR VLHRSPQYHR RLSELVRRSL LSPASAGSGG VNGNSRPLRL
501: SSPISQEMEL PGNHEHRTSS ALERHRDDAV GLSNSSRTLV AAREGRSRLV TEIRNVLDLM RRNEGLNVED VMILDHSVFF GMPDIQDRHR DMRLDVDNMS
601: YEELLALGER IGDVCTGLSE ETISSRLKQR NFISIKTEQP EEAEPCCICR EEYSNGDGLG TLECGHDFHT DCIKQWLMQK NLCPVCKTTG LTT

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.