Factsheet for Solyc01g107930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066252	Potato	nucleus	91.23	91.61
Solyc01g107940.2.1	Tomato	nucleus	74.93	76.1
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	53.62	53.03
Zm00001d026446_P001	Maize	cytosol	11.7	45.65
VIT_03s0063g00160.t01	Wine grape	nucleus	39.0	38.15
KRH50319	Soybean	nucleus	33.84	33.99
Bra015221.1-P	Field mustard	nucleus	27.44	33.0
KRH70661	Soybean	mitochondrion, nucleus	32.73	32.24
CDY37230	Canola	nucleus	26.18	31.92
CDY62314	Canola	nucleus	26.18	31.76
Bra039842.1-P	Field mustard	nucleus	26.32	31.66
Solyc12g088740.1.1	Tomato	nucleus	30.36	31.46
Solyc04g078680.2.1	Tomato	nucleus	31.62	31.44
GSMUA_Achr9P11290_001	Banana	nucleus	29.8	30.7
GSMUA_Achr8P15680_001	Banana	nucleus	30.22	30.14
AT4G34040.1	Thale cress	nucleus	27.3	29.43
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	22.28	27.68
Os04t0648800-01	Rice	nucleus	24.93	26.84
TraesCS2A01G514400.3	Wheat	nucleus	24.93	26.76
AT2G15530.4	Thale cress	nucleus	28.97	26.67
HORVU2Hr1G113930.2	Barley	nucleus	24.23	26.61
TraesCS2D01G516000.1	Wheat	nucleus	24.65	26.46
Zm00001d002080_P002	Maize	nucleus	24.37	26.4
TraesCS2B01G542200.2	Wheat	nucleus	24.51	26.27
EES11547	Sorghum	nucleus	24.09	26.21
Zm00001d026445_P001	Maize	nucleus	23.54	25.8
Solyc12g010500.1.1	Tomato	nucleus	6.27	25.14
Zm00001d025027_P002	Maize	nucleus	23.96	24.71
EES10483	Sorghum	nucleus	23.82	24.57
Zm00001d004300_P003	Maize	nucleus	23.26	24.06
Solyc12g040390.1.1	Tomato	nucleus, plastid	10.17	23.93
Solyc03g026150.2.1	Tomato	nucleus	7.52	22.78
Solyc03g118840.2.1	Tomato	nucleus	12.26	22.74
Solyc08g006460.2.1	Tomato	nucleus	16.43	22.22
Os04t0185500-01	Rice	nucleus	21.73	22.0
TraesCS2D01G022900.1	Wheat	nucleus	21.45	21.97
TraesCS2A01G022100.1	Wheat	nucleus	21.31	21.83
TraesCS2B01G030700.1	Wheat	nucleus	21.17	21.68
HORVU2Hr1G003340.5	Barley	nucleus	21.31	21.67
Solyc12g096420.1.1	Tomato	nucleus	16.43	21.42
Solyc09g007530.2.1	Tomato	nucleus	16.16	21.4
Solyc12g019190.1.1	Tomato	mitochondrion	6.55	21.36
Solyc12g019200.1.1	Tomato	mitochondrion	6.13	20.0
Solyc11g062260.1.1	Tomato	nucleus	6.82	19.92
Solyc05g008840.1.1	Tomato	nucleus, plastid	5.85	19.09
Solyc10g007140.2.1	Tomato	nucleus	13.79	19.08
Solyc12g014070.1.1	Tomato	nucleus	13.51	18.13
Solyc09g007620.1.1	Tomato	nucleus	3.9	16.0
Solyc07g062720.1.1	Tomato	nucleus	14.35	13.29
Solyc02g005480.2.1	Tomato	nucleus	4.74	12.69
Solyc01g087060.2.1	Tomato	nucleus	6.27	12.16

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4B309	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF127	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g107930.2
EnsemblPlants:Solyc01g107930.2.1	UniParc:UPI000276804E	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:95311695..95316125

Molecular Weight (calculated)

77088.9 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.622

Length

718 amino acids

Sequence
(BLAST)

001: MQRNRSILDS YPETVNLNQG STSSNASGDP TSSWDSLRNS MEGRLSDSML SSARGSLRRA DGISYNTQNC SARDQGESSS SANLHGIGHA WPSSSSDHVL
101: TNSNSEERRF GPSNALHPDS STSIYGGNHL IGSPTILPNL ASAHSPANAN LSGIYNNGDT RLVMRPSVSS TVYTSSSRRE AERPASGVSY NAGTSSGSSR
201: YWSGFTDIAG SPTGWGLSGK RKVLESSSGQ SCGRCSSSNA QPENIRPHNF PSQHGASSSL NISPASASVQ NIYHLENLYS RNRIGTRVAA SDIIPPLSAS
301: GVAETSARNS GSGQNLEIHD TVTFGLLSTR TNLGHSSVGS TLVTPQPISV SNYLGSRQPI SQSMNAGNSR SHSDLMYVSG VPGGLHSVPR NVSPNSRGGS
401: SSSLNVVSPD SEDEANFWSS IRNNRVPLPV VPAPETGNMV QDSTNWSLAT SNPSYPRNMP SSSALSRGPS MQTSTTARTP YQNLATRSTR SSSEISPRTL
501: LPPVESDFGS QRGNFSLLSS AASPVEEAEI SLRSSSQGSS SRRNHRNHLI SSLMTNFPSN EVGGSRGLAS DIEGRHRLIR HVLHSMRRGE NRQSEDYMML
601: DSFLNGAAEI HDTHRGMRLD VDNMSYEELL ALEERIGNVN TGLSEGTILK RMRRRKHDSI SGGSSSNMEP CCICREEYTS GDYMGILDCG HEFHSSCIKQ
701: WLMLKNVCPI CKNTALKK

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.