Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400079217 | Potato | cytosol | 12.73 | 91.92 |
Solyc01g107930.2.1 | Tomato | nucleus | 91.61 | 91.23 |
Zm00001d026446_P001 | Maize | cytosol | 12.31 | 47.83 |
VIT_03s0063g00160.t01 | Wine grape | nucleus | 40.28 | 39.24 |
KRH50319 | Soybean | nucleus | 34.69 | 34.69 |
Bra015221.1-P | Field mustard | nucleus | 27.97 | 33.5 |
KRH70661 | Soybean | mitochondrion, nucleus | 33.29 | 32.65 |
PGSC0003DMT400039849 | Potato | nucleus | 31.19 | 32.18 |
CDY37230 | Canola | nucleus | 26.43 | 32.09 |
CDY62314 | Canola | nucleus | 26.43 | 31.93 |
Bra039842.1-P | Field mustard | nucleus | 26.57 | 31.83 |
GSMUA_Achr9P11290_001 | Banana | nucleus | 29.51 | 30.27 |
PGSC0003DMT400020528 | Potato | nucleus | 29.09 | 30.19 |
GSMUA_Achr8P15680_001 | Banana | nucleus | 30.35 | 30.14 |
AT4G34040.1 | Thale cress | nucleus | 27.83 | 29.88 |
HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 22.94 | 28.37 |
HORVU2Hr1G113930.2 | Barley | nucleus | 24.9 | 27.22 |
Os04t0648800-01 | Rice | nucleus | 25.31 | 27.14 |
TraesCS2A01G514400.3 | Wheat | nucleus | 25.31 | 27.06 |
Zm00001d002080_P002 | Maize | nucleus | 25.04 | 27.0 |
AT2G15530.4 | Thale cress | nucleus | 29.37 | 26.92 |
Zm00001d026445_P001 | Maize | nucleus | 24.62 | 26.87 |
TraesCS2D01G516000.1 | Wheat | nucleus | 25.04 | 26.76 |
EES11547 | Sorghum | nucleus | 24.48 | 26.52 |
TraesCS2B01G542200.2 | Wheat | nucleus | 24.76 | 26.42 |
Zm00001d025027_P002 | Maize | nucleus | 25.17 | 25.86 |
EES10483 | Sorghum | nucleus | 24.9 | 25.57 |
Zm00001d004300_P003 | Maize | nucleus | 24.34 | 25.07 |
PGSC0003DMT400078539 | Potato | plastid | 8.53 | 24.5 |
PGSC0003DMT400020398 | Potato | nucleus | 6.01 | 24.29 |
Os04t0185500-01 | Rice | nucleus | 22.94 | 23.13 |
PGSC0003DMT400037132 | Potato | nucleus | 7.69 | 23.01 |
TraesCS2D01G022900.1 | Wheat | nucleus | 22.52 | 22.97 |
TraesCS2A01G022100.1 | Wheat | nucleus | 22.38 | 22.82 |
TraesCS2B01G030700.1 | Wheat | nucleus | 22.24 | 22.68 |
HORVU2Hr1G003340.5 | Barley | nucleus | 22.38 | 22.66 |
PGSC0003DMT400014732 | Potato | nucleus | 12.17 | 22.42 |
PGSC0003DMT400067670 | Potato | nucleus | 15.94 | 21.59 |
PGSC0003DMT400004449 | Potato | nucleus | 16.08 | 21.22 |
PGSC0003DMT400075959 | Potato | nucleus | 15.24 | 20.0 |
PGSC0003DMT400082375 | Potato | nucleus | 6.85 | 19.92 |
PGSC0003DMT400054921 | Potato | nucleus | 14.27 | 19.65 |
PGSC0003DMT400017553 | Potato | nucleus | 6.29 | 18.52 |
PGSC0003DMT400039631 | Potato | nucleus | 13.29 | 17.72 |
PGSC0003DMT400095772 | Potato | cytosol | 4.48 | 17.2 |
PGSC0003DMT400032385 | Potato | nucleus | 14.69 | 12.93 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400066252 | EnsemblPlantsGene:PGSC0003DMG400025779 | EntrezGene:102587478 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF127 | PFAM:PF13639 | PFscan:PS50089 |
PGSC:PGSC0003DMG400025779 | RefSeq:XP_006346398.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002949D0B |
UniProt:M1CF92 | MapMan:35.1 | : | : | : | : |
Description
RING zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025779]
Coordinates
chr1:+:84282359..84288063
Molecular Weight (calculated)
76907.8 Da
IEP (calculated)
8.032
GRAVY (calculated)
-0.616
Length
715 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRNRNILDS FPETIDLNQG SVSSNASGDP TSSWDSLRNS MEGRLSNSML SSARESLRRA DDISYNTQNC RARDQGESSS SANLHGIGHA SHLRIGHAWP
101: SSSSNHVLTN SNSEERRFGP YNVLDPDSST SGYGGNHLIG SPTILPNLAS AHSPANANLS GIYNNGDTRL VMRPSVSSTV YTSSSRWEAE RPASGVSYNA
201: GTSSGRSSYR PGFTDISGSP MGWGLSYKRK VLEGSSGQSC GRSSSSNAQS ENIRPHNFPS QHGASSSLNI SPASASVQNR IGTRVIASDI IPPLSASGVA
301: ETSARNSGSG QNLENHDTVT FGLLPTRTNL GHSSVGSTLV TPQPISVSNY LGSRQPISQS MNAGNSRSHS GLMYVSGVPS GLHPVPRNVS PNSRGGSSSS
401: LNVVSPDSED EANFWSSIRS NRVPLPFVPA PESGNMVQDS TNWSLATSNG SYSRNMPSSS ALSRGPSMQT STTARTPYQN LATSSTHSSS EISPRTLLPL
501: VESESGSQRG NFPLLSSAAS PVEEAEISLR SSSRGSSSRR NHRNHLISSL MTNFPSNEVD GSRGLASDIE GRHRLIRQVL HSMRRGENRR SEDYMMLDSF
601: LNGAAEIHDT HRGMRLDVDN MSYEELLALE ERIGNVNTGL SEGTILERMK QRKHDSIYGG SSSNMEPCCI CREEYASGDY MGILDCGHEF HSSCIKQWLM
701: LKNVCPICKM TALKK
101: SSSSNHVLTN SNSEERRFGP YNVLDPDSST SGYGGNHLIG SPTILPNLAS AHSPANANLS GIYNNGDTRL VMRPSVSSTV YTSSSRWEAE RPASGVSYNA
201: GTSSGRSSYR PGFTDISGSP MGWGLSYKRK VLEGSSGQSC GRSSSSNAQS ENIRPHNFPS QHGASSSLNI SPASASVQNR IGTRVIASDI IPPLSASGVA
301: ETSARNSGSG QNLENHDTVT FGLLPTRTNL GHSSVGSTLV TPQPISVSNY LGSRQPISQS MNAGNSRSHS GLMYVSGVPS GLHPVPRNVS PNSRGGSSSS
401: LNVVSPDSED EANFWSSIRS NRVPLPFVPA PESGNMVQDS TNWSLATSNG SYSRNMPSSS ALSRGPSMQT STTARTPYQN LATSSTHSSS EISPRTLLPL
501: VESESGSQRG NFPLLSSAAS PVEEAEISLR SSSRGSSSRR NHRNHLISSL MTNFPSNEVD GSRGLASDIE GRHRLIRQVL HSMRRGENRR SEDYMMLDSF
601: LNGAAEIHDT HRGMRLDVDN MSYEELLALE ERIGNVNTGL SEGTILERMK QRKHDSIYGG SSSNMEPCCI CREEYASGDY MGILDCGHEF HSSCIKQWLM
701: LKNVCPICKM TALKK
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.