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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079217 Potato cytosol 12.73 91.92
Solyc01g107930.2.1 Tomato nucleus 91.61 91.23
Zm00001d026446_P001 Maize cytosol 12.31 47.83
VIT_03s0063g00160.t01 Wine grape nucleus 40.28 39.24
KRH50319 Soybean nucleus 34.69 34.69
Bra015221.1-P Field mustard nucleus 27.97 33.5
KRH70661 Soybean mitochondrion, nucleus 33.29 32.65
PGSC0003DMT400039849 Potato nucleus 31.19 32.18
CDY37230 Canola nucleus 26.43 32.09
CDY62314 Canola nucleus 26.43 31.93
Bra039842.1-P Field mustard nucleus 26.57 31.83
GSMUA_Achr9P11290_001 Banana nucleus 29.51 30.27
PGSC0003DMT400020528 Potato nucleus 29.09 30.19
GSMUA_Achr8P15680_001 Banana nucleus 30.35 30.14
AT4G34040.1 Thale cress nucleus 27.83 29.88
HORVU2Hr1G113970.2 Barley cytosol, nucleus 22.94 28.37
HORVU2Hr1G113930.2 Barley nucleus 24.9 27.22
Os04t0648800-01 Rice nucleus 25.31 27.14
TraesCS2A01G514400.3 Wheat nucleus 25.31 27.06
Zm00001d002080_P002 Maize nucleus 25.04 27.0
AT2G15530.4 Thale cress nucleus 29.37 26.92
Zm00001d026445_P001 Maize nucleus 24.62 26.87
TraesCS2D01G516000.1 Wheat nucleus 25.04 26.76
EES11547 Sorghum nucleus 24.48 26.52
TraesCS2B01G542200.2 Wheat nucleus 24.76 26.42
Zm00001d025027_P002 Maize nucleus 25.17 25.86
EES10483 Sorghum nucleus 24.9 25.57
Zm00001d004300_P003 Maize nucleus 24.34 25.07
PGSC0003DMT400078539 Potato plastid 8.53 24.5
PGSC0003DMT400020398 Potato nucleus 6.01 24.29
Os04t0185500-01 Rice nucleus 22.94 23.13
PGSC0003DMT400037132 Potato nucleus 7.69 23.01
TraesCS2D01G022900.1 Wheat nucleus 22.52 22.97
TraesCS2A01G022100.1 Wheat nucleus 22.38 22.82
TraesCS2B01G030700.1 Wheat nucleus 22.24 22.68
HORVU2Hr1G003340.5 Barley nucleus 22.38 22.66
PGSC0003DMT400014732 Potato nucleus 12.17 22.42
PGSC0003DMT400067670 Potato nucleus 15.94 21.59
PGSC0003DMT400004449 Potato nucleus 16.08 21.22
PGSC0003DMT400075959 Potato nucleus 15.24 20.0
PGSC0003DMT400082375 Potato nucleus 6.85 19.92
PGSC0003DMT400054921 Potato nucleus 14.27 19.65
PGSC0003DMT400017553 Potato nucleus 6.29 18.52
PGSC0003DMT400039631 Potato nucleus 13.29 17.72
PGSC0003DMT400095772 Potato cytosol 4.48 17.2
PGSC0003DMT400032385 Potato nucleus 14.69 12.93
Protein Annotations
EnsemblPlants:PGSC0003DMT400066252EnsemblPlantsGene:PGSC0003DMG400025779EntrezGene:102587478Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155PANTHER:PTHR14155:SF127PFAM:PF13639PFscan:PS50089
PGSC:PGSC0003DMG400025779RefSeq:XP_006346398.1SEG:segSMART:SM00184SUPFAM:SSF57850UniParc:UPI0002949D0B
UniProt:M1CF92MapMan:35.1::::
Description
RING zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025779]
Coordinates
chr1:+:84282359..84288063
Molecular Weight (calculated)
76907.8 Da
IEP (calculated)
8.032
GRAVY (calculated)
-0.616
Length
715 amino acids
Sequence
(BLAST)
001: MQRNRNILDS FPETIDLNQG SVSSNASGDP TSSWDSLRNS MEGRLSNSML SSARESLRRA DDISYNTQNC RARDQGESSS SANLHGIGHA SHLRIGHAWP
101: SSSSNHVLTN SNSEERRFGP YNVLDPDSST SGYGGNHLIG SPTILPNLAS AHSPANANLS GIYNNGDTRL VMRPSVSSTV YTSSSRWEAE RPASGVSYNA
201: GTSSGRSSYR PGFTDISGSP MGWGLSYKRK VLEGSSGQSC GRSSSSNAQS ENIRPHNFPS QHGASSSLNI SPASASVQNR IGTRVIASDI IPPLSASGVA
301: ETSARNSGSG QNLENHDTVT FGLLPTRTNL GHSSVGSTLV TPQPISVSNY LGSRQPISQS MNAGNSRSHS GLMYVSGVPS GLHPVPRNVS PNSRGGSSSS
401: LNVVSPDSED EANFWSSIRS NRVPLPFVPA PESGNMVQDS TNWSLATSNG SYSRNMPSSS ALSRGPSMQT STTARTPYQN LATSSTHSSS EISPRTLLPL
501: VESESGSQRG NFPLLSSAAS PVEEAEISLR SSSRGSSSRR NHRNHLISSL MTNFPSNEVD GSRGLASDIE GRHRLIRQVL HSMRRGENRR SEDYMMLDSF
601: LNGAAEIHDT HRGMRLDVDN MSYEELLALE ERIGNVNTGL SEGTILERMK QRKHDSIYGG SSSNMEPCCI CREEYASGDY MGILDCGHEF HSSCIKQWLM
701: LKNVCPICKM TALKK
Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.