Factsheet for PGSC0003DMT400054921

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007140.2.1	Tomato	nucleus	97.11	97.11
PGSC0003DMT400039631	Potato	nucleus	62.24	60.26
PGSC0003DMT400079217	Potato	cytosol	10.21	53.54
VIT_19s0014g01850.t01	Wine grape	nucleus	43.16	41.64
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	27.55	36.39
VIT_03s0088g01090.t01	Wine grape	nucleus	31.79	36.1
VIT_03s0097g00680.t01	Wine grape	nucleus	28.52	35.15
KRH22017	Soybean	nucleus	33.53	32.95
KRH55161	Soybean	nucleus	28.71	32.53
KRH26195	Soybean	nucleus	28.32	32.1
AT1G53190.1	Thale cress	nucleus	29.48	30.97
KRH30071	Soybean	cytosol	20.42	30.81
Bra039659.1-P	Field mustard	nucleus	26.98	30.43
CDY24110	Canola	nucleus	26.98	30.43
CDY26006	Canola	nucleus	26.59	29.87
PGSC0003DMT400032385	Potato	nucleus	45.66	29.19
CDY25871	Canola	nucleus	26.59	28.87
Bra038109.1-P	Field mustard	nucleus	26.59	28.75
CDY55839	Canola	nucleus	26.78	28.43
KRH55165	Soybean	nucleus	16.76	27.97
KRH55090	Soybean	nucleus	19.65	27.42
Bra027282.1-P	Field mustard	nucleus	23.31	27.19
Bra001582.1-P	Field mustard	nucleus	22.74	27.0
CDX97629	Canola	nucleus	22.93	26.98
CDY68521	Canola	nucleus	22.74	26.76
CDX75805	Canola	cytosol	22.54	26.41
CDX82450	Canola	nucleus	22.74	26.34
AT3G15070.1	Thale cress	nucleus	23.7	25.31
PGSC0003DMT400020398	Potato	nucleus	8.29	24.29
PGSC0003DMT400082375	Potato	nucleus	11.18	23.58
PGSC0003DMT400004449	Potato	nucleus	23.12	22.14
PGSC0003DMT400017553	Potato	nucleus	10.21	21.81
PGSC0003DMT400078539	Potato	plastid	10.4	21.69
EES03404	Sorghum	nucleus	20.62	20.54
Os05t0564300-01	Rice	nucleus	19.65	20.4
Zm00001d011541_P004	Maize	nucleus	20.42	20.0
Os01t0667700-02	Rice	nucleus	20.04	19.85
KXG22536	Sorghum	nucleus	19.27	19.68
Zm00001d009571_P002	Maize	nucleus	18.88	19.14
TraesCS3A01G246900.3	Wheat	nucleus	19.27	18.98
HORVU1Hr1G087900.1	Barley	cytosol	18.88	18.85
PGSC0003DMT400037132	Potato	nucleus	8.67	18.83
TraesCS3B01G272400.4	Wheat	nucleus	19.08	18.75
TraesCS3D01G244600.1	Wheat	nucleus	19.08	18.75
HORVU3Hr1G061010.4	Barley	nucleus	18.5	18.25
TraesCS1D01G405800.9	Wheat	cytosol	17.73	17.56
TraesCS1A01G398300.8	Wheat	cytosol	17.92	17.25
TraesCS1B01G426200.9	Wheat	cytosol	18.11	17.15
PGSC0003DMT400014732	Potato	nucleus	12.72	17.01
Zm00001d039015_P002	Maize	cytosol	12.72	16.14
PGSC0003DMT400039849	Potato	nucleus	20.23	15.15
PGSC0003DMT400066252	Potato	nucleus	19.65	14.27
PGSC0003DMT400067670	Potato	nucleus	14.07	13.83
PGSC0003DMT400020528	Potato	nucleus	17.92	13.5
PGSC0003DMT400095772	Potato	cytosol	4.62	12.9
PGSC0003DMT400075959	Potato	nucleus	13.1	12.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400054921	EnsemblPlantsGene:PGSC0003DMG400021310	EntrezGene:102588519	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089
PGSC:PGSC0003DMG400021310	RefSeq:XP_006360055.1	RefSeq:XP_015170133.1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002963BC5
UniProt:M1BX19	MapMan:35.1	:	:	:	:

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021310]

Coordinates

chr10:+:2113257..2121598

Molecular Weight (calculated)

57324.6 Da

IEP (calculated)

6.266

GRAVY (calculated)

-0.567

Length

519 amino acids

Sequence
(BLAST)

001: MSYSNQITDS EAEQRSQDVQ PEPYAFYRSL ATFQQPNVHA ILPAPGNAGN FYLHHPQYHQ EGALVYGKLQ YDGVQYQHPA TNLDPAIASS SNHYNHYMAA
101: PSAPRDFPIP VNHGQHEQLP FASTQGNLGV NEGSYGRNNP YVDGVGGSFK RKNAEGIPVN FQYQHALAGS SFPLASMSAA SFVPPEYRGN GSLSFTEDGA
201: PRGMNNHQPQ GNYVGQTCEF PGNFWSGLQF NSSARESETW AWNHSSRLPY LPGDTQGCED GGNISVRGYQ VTNGNGGLTS FVYPSIPQGH PNIRHLPPHI
301: QGVRPQFITL PPQMTASSHR HLPSSSFDST INPFALVEAG SRYIRPFPPT AFRLYRPQRG EFMLGTNTRL HNLPNMRVLP EDGVAMLDIP GYHEVRDSVD
401: QHREMRMDVD HMSYEELLAL GEQIGTAKTG LSEEVIVGHL KTRSFSSVEI PCNFGSAACL DHKTDFCVIC QSDYKDQENV GTLDCGHEYH AECVTNWLIL
501: KNNCPICKST ALCAEGKDS

Best Arabidopsis Sequence Match ( AT1G53190.2 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.