Factsheet for PGSC0003DMT400004449

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007530.2.1	Tomato	nucleus	95.94	95.94
VIT_08s0040g02160.t01	Wine grape	nucleus	58.3	57.88
PGSC0003DMT400079217	Potato	cytosol	9.96	54.55
GSMUA_AchrUn_...	Banana	nucleus	11.25	54.46
KRG95955	Soybean	nucleus	51.48	50.82
KRH19845	Soybean	nucleus	51.11	50.36
KRH32434	Soybean	nucleus	49.26	49.54
KRH67668	Soybean	nucleus	50.0	49.18
GSMUA_Achr5P08460_001	Banana	nucleus	32.66	30.84
PGSC0003DMT400020398	Potato	nucleus	8.3	25.42
PGSC0003DMT400039631	Potato	nucleus	23.8	24.07
PGSC0003DMT400082375	Potato	nucleus	10.52	23.17
PGSC0003DMT400054921	Potato	nucleus	22.14	23.12
Zm00001d008649_P003	Maize	cytosol	22.14	22.77
Os01t0159300-01	Rice	nucleus	21.03	22.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	21.03	22.27
EES00281	Sorghum	nucleus	20.85	21.94
PGSC0003DMT400017553	Potato	nucleus	9.78	21.81
PGSC0003DMT400078539	Potato	plastid	9.96	21.69
Os05t0163400-03	Rice	nucleus	21.22	21.58
Zm00001d039769_P002	Maize	cytosol	21.59	21.23
TraesCS1B01G129600.1	Wheat	nucleus	20.48	20.79
TraesCS1A01G107600.1	Wheat	nucleus	20.48	20.67
TraesCS1D01G111500.1	Wheat	nucleus	20.3	20.52
HORVU1Hr1G024190.2	Barley	nucleus	20.3	20.48
TraesCS3B01G120600.2	Wheat	cytosol	19.0	19.88
TraesCS3D01G105300.1	Wheat	cytosol	19.0	19.88
EES19093	Sorghum	nucleus	19.56	19.7
TraesCS3A01G103000.1	Wheat	nucleus	18.82	19.65
PGSC0003DMT400037132	Potato	nucleus	8.49	19.25
PGSC0003DMT400014732	Potato	nucleus	13.65	19.07
PGSC0003DMT400039849	Potato	nucleus	23.25	18.18
PGSC0003DMT400067670	Potato	nucleus	17.53	17.99
HORVU3Hr1G018800.2	Barley	cytosol, plastid	19.0	17.49
PGSC0003DMT400066252	Potato	nucleus	21.22	16.08
PGSC0003DMT400075959	Potato	nucleus	16.05	15.96
PGSC0003DMT400020528	Potato	nucleus	19.0	14.95
PGSC0003DMT400032385	Potato	nucleus	21.03	14.04
PGSC0003DMT400095772	Potato	cytosol	4.61	13.44
CDY47948	Canola	nucleus	9.78	10.54
Bra036336.1-P	Field mustard	nucleus	9.78	10.54
Bra028576.1-P	Field mustard	cytosol	4.24	8.13

Protein Annotations

EntrezGene:102589403	Gene3D:3.30.40.10	MapMan:35.1	InterPro:IPR001841	InterPro:IPR013083	UniProt:M0ZNG6
PFAM:PF13639	EnsemblPlantsGene:PGSC0003DMG400001775	PGSC:PGSC0003DMG400001775	EnsemblPlants:PGSC0003DMT400004449	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF47	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000295CD5C	RefSeq:XP_006361799.1	RefSeq:XP_006361800.1
RefSeq:XP_006361802.1	RefSeq:XP_006361803.1	RefSeq:XP_015170951.1	RefSeq:XP_015170952.1	RefSeq:XP_015170953.1	RefSeq:XP_015170954.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

Protein containing C-terminal RING-finger [Source:PGSC_GENE;Acc:PGSC0003DMG400001775]

Coordinates

chr9:+:6276068..6280323

Molecular Weight (calculated)

59647.4 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.766

Length

542 amino acids

Sequence
(BLAST)

001: MGHRNSFNMS QIFGTEDDQR WNVPEQAPLP FARAGVPEGS NIVYPVDSMS IDGVHHSSQG HASRPSGYSS SNPNMEIPHC QPQVQGPFHD PFLHSGTGGF
101: HMIHENYPHQ ASSSAHGGQT YHGVDGGLVD LTMGSGRGPY KRKSPGIPAG GESGSTSRYF DAGSSSDLPS DSWQEKQNPD PHYTTWGLHP SYRGNSLSIG
201: GEGSQRNVRS RAAFDLQNNV GRAHITSTPS HHSNSSRTST DYCSSVNYLA PSSNSSAREW NHAVMPPAAA HGRNFAPDAS FFCYDMNHYD MVTGNISTSL
301: EMGNYHNDFT SNRSSLPQHL PGSLPSSRGV RSSYSQRSSP TFRTSSSYMR HGHVGTSDDG SQLFTEGYAS RHSRPLSTLG LRSSDRNGRT RVSSDRYRSL
401: AGEAGFREQL ASEGVIIPDR STYYGSRSMF DQHRDMRLDI DDMGYEELLA LGERIGHVNT GLSEELISKC MTESIYCSSD QNHEEGNCVI CLEEYVNMDD
501: VGTLKSCIHD FHVGCIRRWL SMKNVCPICK KTALDDDDMK EK

Best Arabidopsis Sequence Match ( AT2G37150.10 )
(BLAST)

001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.