Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G111500.1 | Wheat | nucleus | 97.21 | 97.39 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 95.9 | 96.44 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 93.67 | 93.67 |
| Os05t0163400-03 | Rice | nucleus | 73.56 | 74.11 |
| EES19093 | Sorghum | nucleus | 63.87 | 63.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.68 | 46.43 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 41.9 | 43.35 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 5.77 | 40.79 |
| TraesCS5A01G312800.1 | Wheat | cytosol, nucleus, plastid | 7.64 | 23.98 |
| KRH32434 | Soybean | nucleus | 21.97 | 21.89 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 13.97 | 21.74 |
| KRH19845 | Soybean | nucleus | 21.79 | 21.27 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 13.78 | 21.2 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 14.15 | 20.6 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 20.86 | 20.51 |
| PGSC0003DMT400004449 | Potato | nucleus | 20.67 | 20.48 |
| Solyc09g007530.2.1 | Tomato | nucleus | 20.67 | 20.48 |
| KRG95955 | Soybean | nucleus | 20.86 | 20.4 |
| CDY55435 | Canola | nucleus | 19.93 | 20.27 |
| Bra023101.1-P | Field mustard | nucleus | 20.11 | 20.26 |
| KRH67668 | Soybean | nucleus | 20.67 | 20.15 |
| CDX79718 | Canola | nucleus | 19.74 | 19.96 |
| CDY68424 | Canola | nucleus | 19.93 | 19.93 |
| CDY46757 | Canola | nucleus | 19.74 | 19.89 |
| Bra017205.1-P | Field mustard | nucleus | 19.74 | 19.74 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 18.81 | 19.73 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 20.11 | 19.11 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 18.62 | 18.98 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 8.75 | 18.8 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 19.74 | 18.47 |
| TraesCS4A01G441400.1 | Wheat | nucleus | 8.38 | 18.0 |
| TraesCS7A01G054700.2 | Wheat | nucleus | 8.38 | 17.86 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 8.38 | 17.79 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 19.74 | 17.7 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 9.31 | 17.36 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 17.13 | 17.07 |
| TraesCS2A01G514400.3 | Wheat | nucleus | 19.74 | 15.84 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 15.27 | 14.07 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 18.06 | 13.84 |
| Bra028576.1-P | Field mustard | cytosol | 7.08 | 13.43 |
| TraesCS5A01G325400.2 | Wheat | nucleus | 8.75 | 12.7 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 12.66 | 11.7 |
| Bra036336.1-P | Field mustard | nucleus | 8.19 | 8.75 |
| CDY47948 | Canola | nucleus | 8.19 | 8.75 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G107600.1 | EnsemblPlantsGene:TraesCS1A01G107600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF45 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16481 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1A:-:105903502..105906285
Molecular Weight (calculated)
58567.9 Da
IEP (calculated)
7.574
GRAVY (calculated)
-0.740
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGHHYHNSQ ISRMDRTNQP RNEPPPFGQK LFMHPRGDAP NGAGPSGYGV TTVRSNELPS SSYAGQSYGQ QMGAPGTLHA SHAGYPPAGS SSSSYAPYNT
101: QHVPSLSYPN RSEDSFIPGV HVDDRRVAPK RRNPITHPVD GVSAGGYYPG SSSNNQFSGY VPLNPVPTRE TCPPQISSNM GSSHWNDHQF LNHEGSQRNV
201: RGRHDHSSIH SEYNSSTACP SSSVHVPPYH PNANAPFGSA PVQRERAPLS LPPRIVPPGT DGSTGIAFRE RPFYPAPQST NISAPVPTLP GSSDVAPFAH
301: IGYTPRPVHH NAGHNYPPPA FTTSSNSGAV RCEPANPRYQ PSMTSYPPAT AAASSSVQPL HAEAAASFRQ PRHVSVGHGG STRSRRMRDS YHCFHPLMIE
401: ENNLGRSAAE RFMMLDQLVI HESREALDPH WDMRLDIDDM SYEELLALEE RIGNVNTGLA DEKISGCVME LACRNSARTQ NDQDKERCII CLEEYKHKDS
501: LGKLKCGHDF HAGCIKKWLE VKNACPVCKA DAANETT
101: QHVPSLSYPN RSEDSFIPGV HVDDRRVAPK RRNPITHPVD GVSAGGYYPG SSSNNQFSGY VPLNPVPTRE TCPPQISSNM GSSHWNDHQF LNHEGSQRNV
201: RGRHDHSSIH SEYNSSTACP SSSVHVPPYH PNANAPFGSA PVQRERAPLS LPPRIVPPGT DGSTGIAFRE RPFYPAPQST NISAPVPTLP GSSDVAPFAH
301: IGYTPRPVHH NAGHNYPPPA FTTSSNSGAV RCEPANPRYQ PSMTSYPPAT AAASSSVQPL HAEAAASFRQ PRHVSVGHGG STRSRRMRDS YHCFHPLMIE
401: ENNLGRSAAE RFMMLDQLVI HESREALDPH WDMRLDIDDM SYEELLALEE RIGNVNTGLA DEKISGCVME LACRNSARTQ NDQDKERCII CLEEYKHKDS
501: LGKLKCGHDF HAGCIKKWLE VKNACPVCKA DAANETT
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.