Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G129600.1 | Wheat | nucleus | 74.11 | 73.97 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 74.48 | 73.93 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 74.11 | 73.56 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 73.92 | 73.51 |
| EES19093 | Sorghum | nucleus | 65.48 | 64.87 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.76 | 46.43 |
| Os01t0159300-01 | Rice | nucleus | 43.34 | 46.11 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 5.63 | 39.47 |
| Os04t0571200-01 | Rice | nucleus | 10.13 | 21.26 |
| PGSC0003DMT400004449 | Potato | nucleus | 21.58 | 21.22 |
| Os05t0550000-00 | Rice | nucleus | 14.45 | 21.15 |
| Solyc09g007530.2.1 | Tomato | nucleus | 21.39 | 21.03 |
| KRH32434 | Soybean | nucleus | 21.01 | 20.78 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 21.01 | 20.51 |
| KRH19845 | Soybean | nucleus | 21.01 | 20.36 |
| CDY55435 | Canola | nucleus | 20.07 | 20.27 |
| Bra023101.1-P | Field mustard | nucleus | 20.26 | 20.26 |
| KRG95955 | Soybean | nucleus | 20.83 | 20.22 |
| CDX79718 | Canola | nucleus | 20.07 | 20.15 |
| CDY68424 | Canola | nucleus | 20.07 | 19.93 |
| CDY46757 | Canola | nucleus | 19.89 | 19.89 |
| KRH67668 | Soybean | nucleus | 20.45 | 19.78 |
| Bra017205.1-P | Field mustard | nucleus | 19.89 | 19.74 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 18.95 | 19.73 |
| Os01t0667700-02 | Rice | nucleus | 18.76 | 19.08 |
| Os05t0564300-01 | Rice | nucleus | 17.45 | 18.6 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 19.7 | 18.58 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 19.7 | 18.29 |
| Os04t0603200-01 | Rice | nucleus | 11.26 | 18.24 |
| Os08t0241400-00 | Rice | nucleus | 12.76 | 18.04 |
| Os03t0173900-01 | Rice | nucleus | 8.44 | 18.0 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 19.51 | 17.36 |
| Os06t0125800-01 | Rice | nucleus | 8.07 | 16.48 |
| Os08t0548300-01 | Rice | nucleus | 9.19 | 16.07 |
| Os09t0535100-01 | Rice | nucleus | 9.76 | 16.0 |
| Os04t0648800-01 | Rice | nucleus | 19.32 | 15.44 |
| Bra028576.1-P | Field mustard | cytosol | 7.5 | 14.13 |
| Os06t0695600-01 | Rice | nucleus | 15.2 | 13.99 |
| Os04t0185500-01 | Rice | nucleus | 17.82 | 13.4 |
| Os02t0150700-01 | Rice | extracellular | 15.01 | 12.48 |
| CDY47948 | Canola | nucleus | 9.57 | 10.14 |
| Bra036336.1-P | Field mustard | nucleus | 9.57 | 10.14 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:4337902 | ProteinID:AAT07659.1 | EMBL:AK073342 | ProteinID:BAF16650.1 |
| ProteinID:BAS92423.1 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os05g0163400 | EnsemblPlants:Os05t0163400-03 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF45 | UniProt:Q75IR3 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000035E017 | RefSeq:XP_015639376.1 | RefSeq:XP_015639377.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0163400-01);Non-protein coding transcript. (Os05t0163400-02);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0163400-03)
Coordinates
chr5:-:3718368..3725296
Molecular Weight (calculated)
58108.3 Da
IEP (calculated)
7.296
GRAVY (calculated)
-0.714
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGHQYNNSQ MSRMDHMDRL NNEPPPFGQK LFMHPRSDPA NGAGSSGYVG NTMRSNDLPS SSYAGQAYGQ QNRAPIHASY SGHAPAGSSS GSYAPYNTQH
101: MPASSYPHGS EDNFIPSSHV DGRRVALKRR NPIIHPTDGF GVGNYYAGSS SNTQFSRPMP PNPIPPPESC VRMPSHLGSN HWNDHRYVNH EGSQRNVRGR
201: HDHSTIHLEQ SPAAACPSSS INVPPYHPNA NGPFGSAPVQ RDRAPLSVHP RILPPGPDGS SIAFRERPYY PAPQSTNISA PVPTLPISCD SAPFAHGGYA
301: PRSAHRNNLR TYPPPAFASS SNPGAVSHEP AIPSYPPAAP SYPPATSAAS SSVQPFHAEA AAHLRHPRHV SVGGSGSARS RRMRDSYHGF HHLMIEDNNL
401: GRSAAERFMM LDQLVIHESR EAFDPHWDMR LDIDDMSYEE LLALEERIGH VNTGLADEKI SGCVMEVACC SSSHLQDDQD NERCVICLEE YKHEDTLGRL
501: KCGHGFHCNC IKKWLQVKNT CPVCKAAAAD EGS
101: MPASSYPHGS EDNFIPSSHV DGRRVALKRR NPIIHPTDGF GVGNYYAGSS SNTQFSRPMP PNPIPPPESC VRMPSHLGSN HWNDHRYVNH EGSQRNVRGR
201: HDHSTIHLEQ SPAAACPSSS INVPPYHPNA NGPFGSAPVQ RDRAPLSVHP RILPPGPDGS SIAFRERPYY PAPQSTNISA PVPTLPISCD SAPFAHGGYA
301: PRSAHRNNLR TYPPPAFASS SNPGAVSHEP AIPSYPPAAP SYPPATSAAS SSVQPFHAEA AAHLRHPRHV SVGGSGSARS RRMRDSYHGF HHLMIEDNNL
401: GRSAAERFMM LDQLVIHESR EAFDPHWDMR LDIDDMSYEE LLALEERIGH VNTGLADEKI SGCVMEVACC SSSHLQDDQD NERCVICLEE YKHEDTLGRL
501: KCGHGFHCNC IKKWLQVKNT CPVCKAAAAD EGS
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.