Factsheet for Bra036336.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47948	Canola	nucleus	99.4	99.4
Bra014043.1-P	Field mustard	nucleus	55.07	48.09
Bra033652.1-P	Field mustard	nucleus	42.54	34.8
Bra027467.1-P	Field mustard	nucleus	25.84	31.71
Bra039842.1-P	Field mustard	nucleus	17.89	15.08
Bra015221.1-P	Field mustard	nucleus	16.9	14.24
KRH32434	Soybean	nucleus	12.52	11.69
KRH19845	Soybean	nucleus	12.33	11.27
KRH67668	Soybean	nucleus	11.93	10.89
KRG95955	Soybean	nucleus	11.73	10.75
Bra028576.1-P	Field mustard	cytosol	5.96	10.6
VIT_08s0040g02160.t01	Wine grape	nucleus	11.13	10.26
Bra023101.1-P	Field mustard	nucleus	10.74	10.13
Solyc09g007530.2.1	Tomato	nucleus	10.74	9.96
PGSC0003DMT400004449	Potato	nucleus	10.54	9.78
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	9.94	9.77
Os05t0163400-03	Rice	nucleus	10.14	9.57
Bra017205.1-P	Field mustard	nucleus	10.14	9.5
TraesCS3D01G105300.1	Wheat	cytosol	9.34	9.07
EES00281	Sorghum	nucleus	9.15	8.93
Zm00001d008649_P003	Maize	cytosol	9.34	8.92
HORVU1Hr1G024190.2	Barley	nucleus	9.34	8.75
Zm00001d039769_P002	Maize	cytosol	9.54	8.71
Bra006070.1-P	Field mustard	nucleus	8.55	8.69
TraesCS3A01G103000.1	Wheat	nucleus	8.95	8.67
TraesCS3B01G120600.2	Wheat	cytosol	8.75	8.49
TraesCS1B01G129600.1	Wheat	nucleus	8.95	8.43
Bra038240.1-P	Field mustard	nucleus	5.57	8.41
TraesCS1D01G111500.1	Wheat	nucleus	8.95	8.4
Os01t0159300-01	Rice	nucleus	8.35	8.38
TraesCS1A01G107600.1	Wheat	nucleus	8.75	8.19
Bra038109.1-P	Field mustard	nucleus	7.75	8.12
Bra022466.1-P	Field mustard	nucleus	5.17	8.02
Bra009015.1-P	Field mustard	plastid	8.35	7.88
GSMUA_Achr5P08460_001	Banana	nucleus	8.95	7.84
HORVU3Hr1G018800.2	Barley	cytosol, plastid	9.15	7.81
EES19093	Sorghum	nucleus	8.35	7.81
Bra039659.1-P	Field mustard	nucleus	6.56	7.17
Bra015967.1-P	Field mustard	nucleus	4.97	7.0
Bra001582.1-P	Field mustard	nucleus	5.37	6.18
Bra027282.1-P	Field mustard	nucleus	5.37	6.07
Bra003830.1-P	Field mustard	nucleus, plastid	3.98	5.9
Bra009800.1-P	Field mustard	nucleus	4.57	5.61
Bra022579.1-P	Field mustard	cytosol	1.39	5.3
Bra028293.1-P	Field mustard	nucleus	2.39	5.02
Bra024007.1-P	Field mustard	nucleus	4.57	4.93
Bra019499.1-P	Field mustard	nucleus	1.59	4.88
Bra016574.1-P	Field mustard	nucleus	3.38	4.75
Bra040450.1-P	Field mustard	nucleus	2.19	4.55
Bra024009.1-P	Field mustard	nucleus	1.19	3.43
GSMUA_AchrUn_...	Banana	nucleus	0.6	2.68
Bra022580.1-P	Field mustard	cytosol	0.6	1.67

Protein Annotations

EnsemblPlants:Bra036336.1	EnsemblPlants:Bra036336.1-P	EnsemblPlantsGene:Bra036336	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	SEG:seg
UniParc:UPI00025459A8	UniProt:M4F5I0	MapMan:35.1	:	:	:

Description

AT1G45180 (E=1e-039) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:+:22552753..22554702

Molecular Weight (calculated)

54494.8 Da

IEP (calculated)

10.632

GRAVY (calculated)

-0.630

Length

503 amino acids

Sequence
(BLAST)

001: MQGERSSIGS LPETLNFENG SSSTNPVVDQ QIRWGDRHSI GDNDLQNYMN TAADTTNTSF ANSVYPEQCD LHMFSLGEGS SSGAKNKAPT ITEKWMAIRH
101: LEELRNDKVE LNPLFMQPSS GANRVVGNLN AKHNGLESGL IQESGVRVGS GADGQHKRKA LDAGIGQSSS SNVGFRELHR GESSSLFSGK NDLNMSLNHG
201: PRGLGPGAVP NMSALPAIPE SSNRNFSVRA NPENVFAAGT VIRQPIAPSL SAPGDQQLVD LRYRHDFGNY TPLNPNASAG TIPPLSRNMI PPFQWNPVAA
301: AAGGSSSSAA PVVDRNVVHR VETRERSNML ANAWTSVQPS PSLTPYQNNS AQNQRRISEH LRRRSLLSSL ATHQRAARSS APPAPLDQHV LHQSGGDATF
401: QAQSRAYSRA VPRQGQQTTN GVSQSSRSLA STSRGRGRLA ELRNVLEQMR RTGTLHLEDV MLLNQSMLGA AGAVVSRRAD WRCLYRSQRG NHIKPIEAMK
501: IQQ

Best Arabidopsis Sequence Match ( AT1G45180.4 )
(BLAST)

001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR

Arabidopsis Description

F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.