Factsheet for Zm00001d039769_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00281	Sorghum	nucleus	80.94	86.6
Zm00001d008649_P003	Maize	cytosol	79.85	83.49
Os01t0159300-01	Rice	nucleus	50.64	55.69
TraesCS3D01G105300.1	Wheat	cytosol	50.27	53.47
TraesCS3B01G120600.2	Wheat	cytosol	49.36	52.51
TraesCS3A01G103000.1	Wheat	nucleus	48.82	51.83
HORVU3Hr1G018800.2	Barley	cytosol, plastid	50.09	46.86
GSMUA_AchrUn_...	Banana	nucleus	9.44	46.43
VIT_16s0022g00290.t01	Wine grape	nucleus	5.63	40.79
Zm00001d026446_P001	Maize	cytosol	11.8	35.33
Zm00001d015453_P001	Maize	cytosol	7.08	30.23
Zm00001d019616_P001	Maize	cytosol	7.08	30.23
Zm00001d013776_P001	Maize	cytosol	6.53	27.91
Zm00001d021225_P002	Maize	cytosol	8.35	26.29
Zm00001d037536_P006	Maize	mitochondrion, plastid	29.04	26.02
VIT_08s0040g02160.t01	Wine grape	nucleus	22.32	22.53
PGSC0003DMT400004449	Potato	nucleus	21.23	21.59
Solyc09g007530.2.1	Tomato	nucleus	21.05	21.4
KRH32434	Soybean	nucleus	20.69	21.15
KRG95955	Soybean	nucleus	20.69	20.77
KRH19845	Soybean	nucleus	20.69	20.73
Zm00001d024406_P002	Maize	nucleus	13.43	20.67
CDX79718	Canola	nucleus	19.78	20.53
Zm00001d026248_P001	Maize	nucleus	14.16	20.53
KRH67668	Soybean	nucleus	20.51	20.51
CDY55435	Canola	nucleus	19.6	20.45
Bra023101.1-P	Field mustard	nucleus	19.6	20.26
CDY68424	Canola	nucleus	19.6	20.11
CDY46757	Canola	nucleus	19.42	20.07
Zm00001d043784_P002	Maize	nucleus	12.52	19.94
Bra017205.1-P	Field mustard	nucleus	19.24	19.74
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	14.16	19.65
Zm00001d011636_P001	Maize	nucleus	11.98	19.53
Zm00001d015323_P002	Maize	cytosol	3.99	19.47
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	17.97	19.34
Zm00001d045517_P001	Maize	mitochondrion, nucleus	9.26	19.03
VIT_13s0019g04100.t01	Wine grape	extracellular	19.42	18.94
GSMUA_Achr5P08460_001	Banana	nucleus	18.87	18.12
Zm00001d048301_P001	Maize	cytosol	7.8	17.84
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	18.87	17.36
Zm00001d011541_P004	Maize	nucleus	16.7	17.36
Zm00001d009571_P002	Maize	nucleus	15.97	17.19
Zm00001d038909_P001	Maize	cytosol, mitochondrion	11.8	16.93
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	8.71	16.72
Zm00001d004300_P003	Maize	nucleus	20.87	16.57
Zm00001d026445_P001	Maize	nucleus	18.87	15.88
Zm00001d002080_P002	Maize	nucleus	19.06	15.84
Zm00001d027868_P004	Maize	cytosol	7.62	15.56
Zm00001d015289_P001	Maize	nucleus	15.97	15.55
Zm00001d025027_P002	Maize	nucleus	19.6	15.52
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	8.53	14.6
Zm00001d006226_P001	Maize	peroxisome	8.35	14.47
Zm00001d014609_P002	Maize	nucleus	14.52	13.68
Zm00001d002624_P003	Maize	cytosol	8.17	13.39
Zm00001d039015_P002	Maize	cytosol	9.62	12.96
Bra028576.1-P	Field mustard	cytosol	6.35	12.37
CDY47948	Canola	nucleus	8.71	9.54
Bra036336.1-P	Field mustard	nucleus	8.71	9.54

Protein Annotations

EnsemblPlants:Zm00001d039769_P002	EnsemblPlants:Zm00001d039769_T002	EnsemblPlantsGene:Zm00001d039769	EntrezGene:103649729	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF45	PFAM:PF13639
PFscan:PS50089	ProteinID:ONM29906.1	ProteinID:ONM29908.1	ProteinID:ONM29912.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00084414C0	UniProt:A0A1D6ML20	MapMan:35.1	:	:

Description

RING/U-box superfamily protein

Coordinates

chr3:+:14333996..14339635

Molecular Weight (calculated)

59138.0 Da

IEP (calculated)

8.425

GRAVY (calculated)

-0.331

Length

551 amino acids

Sequence
(BLAST)

001: MARNNEGHLE LPEMDQIQPK NIPHNESLPL GQKLLLHHGS DAPLRIGHSS HGNMGLRIND LPSSSRTVQT LGYRVGNPGT SHAPFVHFHA GSSGSHLPDP
101: AVNYPHRSEE GFAPVGSHMD NRRAAMKRKG PSVHPAGISA TGYYVGSSSS TQPSNSVQPN AAPLAEPFLR QIPLSIDQSG WDIQHLIHQE GFQRNVRARH
201: SSIPLVPRSA STYPLNINSV HVPSFGSTAS ASSSAPVEMN QVPVSLPTRT LPSGAPGMTS RVPTGRAYYP VVGSSSSSSS VGAVPTIHGS SGAAMFANGG
301: YVPSSVHAGT VPIFPNPAPA TSSGSRAMPH QMVIQSHPAA TSAATSTSMR TAQPSLPART AAASRHARHV SAGLANNGRY RRARSSYYRL HPLMVEAEVD
401: SLFLPYCFNE VEFKSLSNLK LMLLLVVKRF MMDHLVFYES RAAAADPHRD MRLDIDNMSY EDLLALGEAM GNVNTGLADE KVSECVKEVV CCSSDHTQMD
501: QDDGSCAICL EDYRDKEALG ILKCRHDFHA GCIKKWLQTK NSCPVCKAAA A

Best Arabidopsis Sequence Match ( AT5G10650.1 )
(BLAST)

001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI

Arabidopsis Description

At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.