Factsheet for TraesCS3A01G103000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G105300.1	Wheat	cytosol	93.26	93.44
TraesCS3B01G120600.2	Wheat	cytosol	93.06	93.24
HORVU3Hr1G018800.2	Barley	cytosol, plastid	87.28	76.91
EES00281	Sorghum	nucleus	54.14	54.56
Os01t0159300-01	Rice	nucleus	50.29	52.1
Zm00001d008649_P003	Maize	cytosol	52.6	51.8
Zm00001d039769_P002	Maize	cytosol	51.83	48.82
TraesCS1A01G107600.1	Wheat	nucleus	43.35	41.9
GSMUA_AchrUn_...	Banana	nucleus	8.86	41.07
VIT_16s0022g00290.t01	Wine grape	nucleus	4.82	32.89
TraesCS5A01G312800.1	Wheat	cytosol, nucleus, plastid	7.32	22.22
TraesCS3A01G260500.1	Wheat	nucleus	13.68	20.58
TraesCS2A01G437200.1	Wheat	nucleus	14.07	19.78
VIT_08s0040g02160.t01	Wine grape	nucleus	20.81	19.78
KRG95955	Soybean	nucleus	20.62	19.49
KRH32434	Soybean	nucleus	20.04	19.3
TraesCS3A01G246900.3	Wheat	nucleus	19.46	19.17
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	18.88	19.14
KRH19845	Soybean	nucleus	20.23	19.09
PGSC0003DMT400004449	Potato	nucleus	19.65	18.82
Solyc09g007530.2.1	Tomato	nucleus	19.65	18.82
KRH67668	Soybean	nucleus	19.85	18.69
TraesCS1A01G373200.1	Wheat	nucleus	12.52	18.62
TraesCS2A01G400200.1	Wheat	nucleus	8.86	18.18
CDY55435	Canola	nucleus	17.92	17.61
CDX79718	Canola	nucleus	17.92	17.51
CDY68424	Canola	nucleus	18.11	17.5
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	9.63	17.36
Bra017205.1-P	Field mustard	nucleus	17.73	17.13
Bra023101.1-P	Field mustard	nucleus	17.34	16.89
TraesCS4A01G112900.1	Wheat	nucleus	8.09	16.8
CDY46757	Canola	nucleus	17.15	16.7
VIT_13s0019g04100.t01	Wine grape	extracellular	17.73	16.28
GSMUA_Achr5P08460_001	Banana	nucleus	17.92	16.2
TraesCS2A01G514400.3	Wheat	nucleus	19.65	15.25
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	17.53	15.19
TraesCS4A01G441400.1	Wheat	nucleus	6.94	14.4
TraesCS7A01G054700.2	Wheat	nucleus	6.94	14.29
TraesCS1A01G398300.8	Wheat	cytosol	14.26	13.73
TraesCS5A01G325400.2	Wheat	nucleus	9.63	13.51
TraesCS2A01G022100.1	Wheat	nucleus	18.11	13.41
TraesCS6A01G121400.2	Wheat	nucleus	15.03	13.38
TraesCS7A01G428300.2	Wheat	nucleus	12.72	11.36
Bra028576.1-P	Field mustard	cytosol	6.17	11.31
CDY47948	Canola	nucleus	8.86	9.15
Bra036336.1-P	Field mustard	nucleus	8.67	8.95

Protein Annotations

EnsemblPlants:TraesCS3A01G103000.1	EnsemblPlantsGene:TraesCS3A01G103000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF45	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3A:-:66507426..66509670

Molecular Weight (calculated)

55434.5 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.420

Length

519 amino acids

Sequence
(BLAST)

001: MDHTQPRDGH GNEPVPLGQM LFEHSGSDAP LRLGPPGFGS MASRSNDVPS SSHATQFPGH RVVNLGTSHV SLVPYRTARS SGHVPYDAQP KPALSSHVDN
101: RMVAMKRKNL LPSVEGMDAV DYYVGSSSNS HFSDLVQPNP SALTEPLHPQ VPLSVGPSNW IDQRLVNQEG SQRNVRARHD SANVSLEPRP ASTYTPSNNH
201: QLPFHSATSA FVSTAAERNQ APFSVPTRTL PSGGTGITGR IYHHPMPMHS SSSSVAAAPT VHGSSNSAMF ANAGFPAPRA VHGSGAAAAP TVHGSSDSAV
301: FANGGFTAPR AVHGGAVPSY GHPSSTVSSG SRAFSHDAVI PNYPASTSTS IRINVPSPIS TAASSRHARV SMAHASTGMN RFVDRSSFHL IAETQRVMME
401: QLAFYQQSRQ AAADPHRDLR LNIDEMSYEE LLALEESIGT VNTGLADEKI SGCVKEVVCC SSDEEQDEED DGRCLVCLEE YKDNDLLGIL KCRHDFHTDC
501: IKKWLQVKNA CPVCKSAAA

Best Arabidopsis Sequence Match ( AT5G24870.1 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.