Factsheet for HORVU3Hr1G018800.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G105300.1	Wheat	cytosol	78.1	88.8
TraesCS3B01G120600.2	Wheat	cytosol	77.93	88.61
TraesCS3A01G103000.1	Wheat	nucleus	76.91	87.28
EES00281	Sorghum	nucleus	48.9	55.92
Os01t0159300-01	Rice	nucleus	44.99	52.89
Zm00001d008649_P003	Maize	cytosol	47.2	52.75
Zm00001d039769_P002	Maize	cytosol	46.86	50.09
HORVU1Hr1G024190.2	Barley	nucleus	38.71	42.46
GSMUA_AchrUn_...	Banana	nucleus	7.81	41.07
HORVU3Hr1G054920.1	Barley	cytosol	5.26	33.7
VIT_16s0022g00290.t01	Wine grape	nucleus	4.07	31.58
HORVU5Hr1G080540.5	Barley	nucleus	6.11	20.93
HORVU2Hr1G101370.5	Barley	nucleus	12.73	20.0
VIT_08s0040g02160.t01	Wine grape	nucleus	18.34	19.78
HORVU3Hr1G064370.1	Barley	plastid	12.9	19.74
KRH32434	Soybean	nucleus	17.83	19.48
KRH19845	Soybean	nucleus	18.0	19.27
Solyc09g007530.2.1	Tomato	nucleus	17.66	19.19
KRG95955	Soybean	nucleus	17.83	19.13
PGSC0003DMT400004449	Potato	nucleus	17.49	19.0
KRH67668	Soybean	nucleus	17.49	18.69
HORVU3Hr1G061010.4	Barley	nucleus	16.47	18.44
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	15.79	18.16
CDY68424	Canola	nucleus	16.3	17.88
HORVU1Hr1G082970.1	Barley	plastid	11.21	17.51
CDY55435	Canola	nucleus	15.62	17.42
HORVU2Hr1G094980.4	Barley	cytosol	7.81	17.36
CDX79718	Canola	nucleus	15.45	17.14
VIT_13s0019g04100.t01	Wine grape	extracellular	16.13	16.81
Bra017205.1-P	Field mustard	nucleus	15.28	16.76
GSMUA_Achr5P08460_001	Banana	nucleus	16.3	16.72
Bra023101.1-P	Field mustard	nucleus	14.94	16.51
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	16.13	16.44
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	8.32	16.39
HORVU7Hr1G009940.2	Barley	nucleus	6.62	16.39
CDY46757	Canola	nucleus	14.77	16.32
HORVU5Hr1G082790.2	Barley	nucleus	9.17	15.61
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	15.45	15.19
HORVU2Hr1G113930.2	Barley	nucleus	16.3	14.68
HORVU1Hr1G087900.1	Barley	cytosol	12.9	14.62
HORVU4Hr1G055690.5	Barley	peroxisome, plastid	8.49	14.2
HORVU7Hr1G098540.1	Barley	nucleus	14.09	14.16
HORVU2Hr1G003340.5	Barley	nucleus	16.3	13.6
Bra028576.1-P	Field mustard	cytosol	5.94	12.37
HORVU6Hr1G022370.10	Barley	mitochondrion	13.92	11.8
CDY47948	Canola	nucleus	7.81	9.15
Bra036336.1-P	Field mustard	nucleus	7.81	9.15
HORVU3Hr1G054870.1	Barley	cytosol, mitochondrion	4.92	6.76

Protein Annotations

EnsemblPlants:HORVU3Hr1G018800.2	EnsemblPlantsGene:HORVU3Hr1G018800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF45	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B4656D1	UniProt:A0A287KB49	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr3H:-:48978105..48982793

Molecular Weight (calculated)

63170.7 Da

IEP (calculated)

7.845

GRAVY (calculated)

-0.444

Length

589 amino acids

Sequence
(BLAST)

001: RLPPSPPTRT NLFLPCVQPS SRAHEAAAPP PTPSPIWTDR APDRPPRSRR LRATRQDCFL ARHHLNHLQV PEMDHTQPRD GHGNEPVPLG MFFEHSVSDA
101: PLRIGPPGFG SMASRSNDVP SSSHATQFPG HRVGNPGTSH VSFVPYRTGR SSGHVPYDAQ PKPALSSHVD NRMVAMKRKN LFPSVEGMDA IDYYVGSSSN
201: SQFSDFVQPN PSALTEPLHP QMPLSIGPSN WIDQRLVNQE GYQRNVRARH DSANILLEPR PASTHTPSNN NQLPFHSTTS AFISTSAERN QAPFSLPTRA
301: LPSGGTGVTG RIYHHAMHGS SSSIAAAPAV HGSSDSVIFG NVGFAAPRAV HGSSAAAAAP AVHGSSDSAV FANGGFTAPR AVHGGAVPSY GHPSSVVSSG
401: SRAISQDAVI PSYPAATSTS TRMNLPSPIS TAASSRHARI SMAQANSGRN RFVDRSSILL VAEAQRAMLE QLAFYQQSRQ AAADPHRDLR LNTDEMSYEE
501: LLALSESIGT VSTGLADEKI AGCVKEVVCC SSDEAQDDED DGRCLVCLEE YKDNDLLGVL KCRHDFHTDC IKKWLQVKNV CPVCKSAAA

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.