Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G418300.1 | Wheat | cytosol | 89.81 | 94.07 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 89.06 | 93.28 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 87.92 | 90.66 |
| Os04t0571200-01 | Rice | nucleus | 71.7 | 74.8 |
| EES11283 | Sorghum | nucleus | 65.28 | 70.04 |
| Zm00001d002624_P003 | Maize | cytosol | 62.64 | 49.4 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 28.3 | 43.6 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 52.45 | 41.0 |
| Solyc03g026150.2.1 | Tomato | nucleus | 33.21 | 37.13 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 29.43 | 35.62 |
| PGSC0003DMT400037132 | Potato | nucleus | 32.08 | 35.56 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 31.7 | 35.29 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 19.62 | 26.0 |
| CDX91624 | Canola | nucleus | 21.13 | 25.45 |
| CDY27083 | Canola | nucleus | 20.75 | 25.11 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 32.83 | 24.72 |
| CDY00512 | Canola | nucleus | 24.91 | 24.18 |
| CDY31919 | Canola | nucleus | 24.53 | 23.81 |
| Bra022579.1-P | Field mustard | cytosol | 11.7 | 23.48 |
| AT5G52140.1 | Thale cress | nucleus | 24.53 | 23.21 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 25.66 | 22.74 |
| HORVU5Hr1G082790.2 | Barley | nucleus | 27.55 | 21.1 |
| AT5G52155.1 | Thale cress | nucleus | 14.34 | 20.88 |
| Bra022580.1-P | Field mustard | cytosol | 13.58 | 20.0 |
| CDX91625 | Canola | cytosol | 16.98 | 19.65 |
| CDY27082 | Canola | cytosol | 16.6 | 18.49 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 6.42 | 18.48 |
| Bra028293.1-P | Field mustard | nucleus | 16.6 | 18.41 |
| HORVU3Hr1G064370.1 | Barley | plastid | 17.36 | 11.95 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 15.85 | 11.2 |
| HORVU1Hr1G082970.1 | Barley | plastid | 15.47 | 10.88 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 18.49 | 9.32 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 16.6 | 8.46 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 16.23 | 8.01 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 17.36 | 7.96 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 17.36 | 7.81 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 18.49 | 7.49 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 16.23 | 7.34 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 17.36 | 6.52 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 15.85 | 6.04 |
| HORVU3Hr1G054870.1 | Barley | cytosol, mitochondrion | 3.4 | 2.1 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A287J0M9 | InterPro:BB | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0046621 | EnsemblPlantsGene:HORVU2Hr1G094980 |
| EnsemblPlants:HORVU2Hr1G094980.4 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF75 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B4834A2 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:667552853..667557008
Molecular Weight (calculated)
29444.7 Da
IEP (calculated)
5.194
GRAVY (calculated)
-0.501
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MFYLFPCQVL MSMEVLHDTT GKKEAAVYYM DAPLPYAIEE NFGGCFFEDD VDLAQVLQDQ EIVYQLIQGN DGSGSSRSHS DPSSSCGHPR KSGGRSLTRG
101: ANYESQLAVD EALARDLQAM EDQIAKAAIE ENNRKEGRKP AGFSTSNNGN TSVSRSSQVF VLTEDGVDPD NMTYEELQQL GETIGTHSKG LPEDVIALLK
201: SSTYKIGIFS RKEKHDECVI CCMAYKNRDK LTTLPCQHQY HRTCVAKWLK INKVCPVCNK EVFGS
101: ANYESQLAVD EALARDLQAM EDQIAKAAIE ENNRKEGRKP AGFSTSNNGN TSVSRSSQVF VLTEDGVDPD NMTYEELQQL GETIGTHSKG LPEDVIALLK
201: SSTYKIGIFS RKEKHDECVI CCMAYKNRDK LTTLPCQHQY HRTCVAKWLK INKVCPVCNK EVFGS
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.