Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G054920.1 | Barley | cytosol | 13.09 | 98.91 |
| HORVU3Hr1G054870.1 | Barley | cytosol, mitochondrion | 59.14 | 95.8 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 75.54 | 90.05 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 72.09 | 88.83 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 75.83 | 87.4 |
| Zm00001d015453_P001 | Maize | cytosol | 12.23 | 65.89 |
| Zm00001d019616_P001 | Maize | cytosol | 12.23 | 65.89 |
| Zm00001d013776_P001 | Maize | cytosol | 12.23 | 65.89 |
| EES04530 | Sorghum | nucleus | 42.88 | 57.53 |
| Os02t0150700-01 | Rice | extracellular | 52.23 | 56.63 |
| Zm00001d015289_P001 | Maize | nucleus | 45.18 | 55.48 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 42.16 | 50.0 |
| CDX97032 | Canola | plastid | 20.0 | 41.49 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 34.82 | 41.09 |
| CDY71882 | Canola | plastid | 20.58 | 40.86 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 20.0 | 37.47 |
| CDX85750 | Canola | nucleus | 20.29 | 36.53 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 28.78 | 36.36 |
| KRH04957 | Soybean | nucleus | 27.05 | 35.34 |
| KRH16134 | Soybean | nucleus | 27.77 | 34.77 |
| CDX95473 | Canola | nucleus | 22.88 | 34.27 |
| KRH52597 | Soybean | nucleus | 26.47 | 34.01 |
| Bra006070.1-P | Field mustard | nucleus | 23.6 | 33.13 |
| AT5G24870.2 | Thale cress | nucleus | 24.75 | 33.08 |
| CDY40109 | Canola | nucleus | 8.78 | 32.8 |
| CDX78393 | Canola | nucleus | 23.31 | 32.79 |
| PGSC0003DMT400067670 | Potato | nucleus | 24.75 | 32.58 |
| CDX88140 | Canola | nucleus | 22.45 | 32.37 |
| Solyc08g006460.2.1 | Tomato | nucleus | 24.6 | 32.2 |
| CDY68658 | Canola | nucleus | 21.73 | 32.2 |
| Bra024009.1-P | Field mustard | nucleus | 8.06 | 32.0 |
| CDX97044 | Canola | nucleus | 23.31 | 31.76 |
| CDX70363 | Canola | nucleus | 22.16 | 31.69 |
| Bra009015.1-P | Field mustard | plastid | 23.45 | 30.58 |
| CDX69813 | Canola | mitochondrion | 23.45 | 30.58 |
| GSMUA_Achr10P... | Banana | nucleus | 22.16 | 30.43 |
| Solyc12g096420.1.1 | Tomato | nucleus | 23.88 | 30.13 |
| AT5G10650.2 | Thale cress | nucleus | 22.45 | 29.71 |
| PGSC0003DMT400075959 | Potato | nucleus | 23.17 | 29.54 |
| CDY13429 | Canola | cytosol | 10.94 | 29.46 |
| KRH61936 | Soybean | nucleus | 23.17 | 28.9 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 14.24 | 26.4 |
| Bra009800.1-P | Field mustard | nucleus | 14.68 | 24.88 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 23.17 | 24.77 |
| HORVU3Hr1G064370.1 | Barley | plastid | 12.66 | 22.86 |
| HORVU1Hr1G082970.1 | Barley | plastid | 12.23 | 22.55 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 5.32 | 21.51 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 6.91 | 20.17 |
| CDY63645 | Canola | nucleus | 12.81 | 19.26 |
| Bra024007.1-P | Field mustard | nucleus | 12.81 | 19.06 |
| CDY13433 | Canola | nucleus | 12.66 | 18.88 |
| AT4G31450.2 | Thale cress | nucleus | 13.38 | 18.71 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 7.77 | 18.06 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 14.39 | 17.3 |
| HORVU5Hr1G082790.2 | Barley | nucleus | 8.35 | 16.76 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 16.83 | 16.57 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 12.09 | 16.15 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 15.11 | 16.05 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 6.04 | 15.85 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 11.8 | 15.59 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 11.94 | 15.46 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 11.8 | 13.92 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 6.76 | 13.35 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G022370.10 | EnsemblPlantsGene:HORVU6Hr1G022370 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF60 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B467E70 | UniProt:A0A287TL37 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr6H:-:70907852..70913391
Molecular Weight (calculated)
77235.1 Da
IEP (calculated)
9.957
GRAVY (calculated)
-0.707
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: PFVKLGLNRL GSCKERKGIR ARKRPHTHTL PSSSPSPPIP APPPRPRGTA SHSGPAGARA LPLRLPDPRL PGPECAAAVR LVIFLIDPCK SWLQNYLTSE
101: NFFSSRYLAT SGYMEEYLSR RSRTAIGFLR RGSGINRSPE ETISQNTEVQ GRTSRVNPMK TRLVDNQERP RYLHGSYKYA SSNVMSGSSS KFPKKFPLRK
201: FGEEKRRQTL LEGADVAESS RRKSDVGCLE GSKKTIVENQ GSDAPQTETE GLTAKDDELI APDPEVSHSA GSSGIPAHTD GSLIRSASLS SETHRQKNKE
301: LNLGRPGYSC SSSFSNQPTI PRIPTVGAKP SYGLVSGEQR RVPRGLKNLG CTSVSDVLPS GCSSDSVYRM SFDAMRKRAS DGDGSSRSRF ISGPSSLGHS
401: HTIYPSISGP RIRTTEESVR QQKLRSRSRN IQDSAVSVRT RRTSPRDTRF RMSEETEDSV LHLNESNAGN QQSVGADFSV EEGSSERSIR PVSVELPHAI
501: YSSSRQGSST RTARRTSTSR FEQSPPQTFR SLARERGGHR RINMEGIAEV LLVLERIEQE AELTYEQLRV LETNLLLGAF TSHDHHSDMR MDIDNMSYEE
601: LLALEERIGF VSTALSEEQF AKCIRRRLYR PVAAKGNKTA IDDIKCSICQ EEFVKGEEVG RLRCEHQYHV CCIRQWLLQK NWCPVCKAPA LPSLN
101: NFFSSRYLAT SGYMEEYLSR RSRTAIGFLR RGSGINRSPE ETISQNTEVQ GRTSRVNPMK TRLVDNQERP RYLHGSYKYA SSNVMSGSSS KFPKKFPLRK
201: FGEEKRRQTL LEGADVAESS RRKSDVGCLE GSKKTIVENQ GSDAPQTETE GLTAKDDELI APDPEVSHSA GSSGIPAHTD GSLIRSASLS SETHRQKNKE
301: LNLGRPGYSC SSSFSNQPTI PRIPTVGAKP SYGLVSGEQR RVPRGLKNLG CTSVSDVLPS GCSSDSVYRM SFDAMRKRAS DGDGSSRSRF ISGPSSLGHS
401: HTIYPSISGP RIRTTEESVR QQKLRSRSRN IQDSAVSVRT RRTSPRDTRF RMSEETEDSV LHLNESNAGN QQSVGADFSV EEGSSERSIR PVSVELPHAI
501: YSSSRQGSST RTARRTSTSR FEQSPPQTFR SLARERGGHR RINMEGIAEV LLVLERIEQE AELTYEQLRV LETNLLLGAF TSHDHHSDMR MDIDNMSYEE
601: LLALEERIGF VSTALSEEQF AKCIRRRLYR PVAAKGNKTA IDDIKCSICQ EEFVKGEEVG RLRCEHQYHV CCIRQWLLQK NWCPVCKAPA LPSLN
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.