Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067670 | Potato | nucleus | 93.22 | 93.75 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 10.73 | 61.96 |
| Solyc12g096420.1.1 | Tomato | nucleus | 61.96 | 59.71 |
| Zm00001d019616_P001 | Maize | cytosol | 13.56 | 55.81 |
| Zm00001d015453_P001 | Maize | cytosol | 13.37 | 55.04 |
| Zm00001d013776_P001 | Maize | cytosol | 13.18 | 54.26 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 50.09 | 48.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.15 | 47.56 |
| CDX85750 | Canola | nucleus | 32.77 | 45.08 |
| CDX97032 | Canola | plastid | 28.44 | 45.07 |
| KRH52597 | Soybean | nucleus | 45.01 | 44.18 |
| CDY71882 | Canola | plastid | 28.63 | 43.43 |
| KRH04957 | Soybean | nucleus | 43.13 | 43.05 |
| KRH16134 | Soybean | nucleus | 43.88 | 41.98 |
| Bra006070.1-P | Field mustard | nucleus | 37.66 | 40.4 |
| CDX78393 | Canola | nucleus | 37.48 | 40.28 |
| KRH61936 | Soybean | nucleus | 41.62 | 39.68 |
| CDX70363 | Canola | nucleus | 35.97 | 39.3 |
| CDX95473 | Canola | nucleus | 34.27 | 39.22 |
| CDX97044 | Canola | nucleus | 37.48 | 39.02 |
| CDY68658 | Canola | nucleus | 34.46 | 39.02 |
| AT5G10650.2 | Thale cress | nucleus | 38.04 | 38.48 |
| CDX88140 | Canola | nucleus | 34.65 | 38.17 |
| CDY40109 | Canola | nucleus | 13.37 | 38.17 |
| AT5G24870.2 | Thale cress | nucleus | 36.72 | 37.5 |
| Bra009015.1-P | Field mustard | plastid | 36.72 | 36.59 |
| CDX69813 | Canola | mitochondrion | 36.53 | 36.4 |
| Bra024009.1-P | Field mustard | nucleus | 11.49 | 34.86 |
| CDY13429 | Canola | cytosol | 15.25 | 31.4 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 33.52 | 30.8 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 33.9 | 30.72 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 32.77 | 30.37 |
| Bra009800.1-P | Field mustard | nucleus | 23.16 | 30.0 |
| EES04530 | Sorghum | nucleus | 29.19 | 29.92 |
| Os06t0695600-01 | Rice | nucleus | 32.39 | 29.71 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 28.25 | 29.18 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 31.83 | 28.99 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 30.7 | 28.9 |
| KXG20741 | Sorghum | nucleus | 32.02 | 28.81 |
| Zm00001d015289_P001 | Maize | nucleus | 30.32 | 28.45 |
| Os02t0150700-01 | Rice | extracellular | 34.27 | 28.39 |
| Zm00001d014609_P002 | Maize | nucleus | 31.26 | 28.38 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 31.45 | 27.69 |
| Solyc12g010500.1.1 | Tomato | nucleus | 9.23 | 27.37 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 29.57 | 27.02 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 18.08 | 26.02 |
| EES12797 | Sorghum | nucleus | 18.27 | 25.94 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 18.27 | 25.87 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 18.08 | 25.74 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 17.89 | 25.54 |
| OQU80147 | Sorghum | nucleus | 17.14 | 25.42 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 32.2 | 24.6 |
| Zm00001d024406_P002 | Maize | nucleus | 16.38 | 24.3 |
| Os04t0603200-01 | Rice | nucleus | 14.88 | 24.01 |
| Os08t0241400-00 | Rice | nucleus | 16.95 | 23.87 |
| Zm00001d026248_P001 | Maize | nucleus | 16.95 | 23.68 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 13.56 | 23.61 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.51 | 23.43 |
| Bra024007.1-P | Field mustard | nucleus | 19.4 | 22.06 |
| Solyc03g118840.2.1 | Tomato | nucleus | 16.01 | 21.96 |
| CDY13433 | Canola | nucleus | 19.21 | 21.89 |
| Solyc12g019190.1.1 | Tomato | mitochondrion | 9.04 | 21.82 |
| CDY63645 | Canola | nucleus | 18.83 | 21.64 |
| Solyc12g019200.1.1 | Tomato | mitochondrion | 8.66 | 20.91 |
| AT4G31450.2 | Thale cress | nucleus | 19.4 | 20.72 |
| Solyc11g062260.1.1 | Tomato | nucleus | 8.66 | 18.7 |
| Solyc09g007530.2.1 | Tomato | nucleus | 17.7 | 17.34 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 7.16 | 17.27 |
| Solyc09g007620.1.1 | Tomato | nucleus | 5.46 | 16.57 |
| Solyc01g107930.2.1 | Tomato | nucleus | 22.22 | 16.43 |
| Solyc12g088740.1.1 | Tomato | nucleus | 21.09 | 16.16 |
| Solyc03g026150.2.1 | Tomato | nucleus | 7.16 | 16.03 |
| Solyc01g107940.2.1 | Tomato | nucleus | 21.28 | 15.98 |
| Solyc04g078680.2.1 | Tomato | nucleus | 21.47 | 15.79 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 21.47 | 15.7 |
| Solyc10g007140.2.1 | Tomato | nucleus | 14.88 | 15.22 |
| Solyc12g014070.1.1 | Tomato | nucleus | 14.69 | 14.58 |
| Solyc01g087060.2.1 | Tomato | nucleus | 9.23 | 13.24 |
| Solyc07g062720.1.1 | Tomato | nucleus | 13.94 | 9.55 |
| Solyc02g005480.2.1 | Tomato | nucleus | 4.14 | 8.21 |
Protein Annotations
| EnsemblPlants:Solyc08g006460.2.1 | EnsemblPlantsGene:Solyc08g006460.2 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000276C03F | UniProt:K4CID4 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr8:+:1062022..1065021
Molecular Weight (calculated)
58225.7 Da
IEP (calculated)
7.934
GRAVY (calculated)
-0.714
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYSSKRAV NGLYVPRRGL RDIADSRDEN VQLCSRYGCS SRLSSMKSPQ VRSTEKPRPL RPSFTSSNGK EVVGSSCRTS SVMANARKSF KDRKAYSHVG
101: NDQSETSCSH GEPEASEASE HMKLSKVHQP QFNSVIRDTG SSKITLKEVG CSSGASSSKP RRLFTPKYSN QNSPVGSSVS SSSKAIGAGT RGTASGAGYM
201: PRNLKCNSRS DISPQSCSTA DSRFSRRDMV KRRNAEGEST SSSKGKKISG ALPKEGDVIR PTRGISISDS RNSKSFDNRE DSRALSVRTR KSMNVPRLRD
301: SVRDSSSGFF QNSPQLESPN FSLQSSSQFF SDASSSDSSA FSFPGNDVED LPAGASGTSA QLGINQLMNR DVLQRYNMDG VAQVLVALER MEQDEELTYE
401: QLLVLETNLF LGGLNSYDQH RGMRLDIDNM SYEELLALEE RMGSVSTALS EEALSKCIRK SIYQSMPSEI GEFGSGENED EVKCSICQEE YVIGDEIGRL
501: ECDHGYHMEC VKHWLSLKNW CPICKASAAP S
101: NDQSETSCSH GEPEASEASE HMKLSKVHQP QFNSVIRDTG SSKITLKEVG CSSGASSSKP RRLFTPKYSN QNSPVGSSVS SSSKAIGAGT RGTASGAGYM
201: PRNLKCNSRS DISPQSCSTA DSRFSRRDMV KRRNAEGEST SSSKGKKISG ALPKEGDVIR PTRGISISDS RNSKSFDNRE DSRALSVRTR KSMNVPRLRD
301: SVRDSSSGFF QNSPQLESPN FSLQSSSQFF SDASSSDSSA FSFPGNDVED LPAGASGTSA QLGINQLMNR DVLQRYNMDG VAQVLVALER MEQDEELTYE
401: QLLVLETNLF LGGLNSYDQH RGMRLDIDNM SYEELLALEE RMGSVSTALS EEALSKCIRK SIYQSMPSEI GEFGSGENED EVKCSICQEE YVIGDEIGRL
501: ECDHGYHMEC VKHWLSLKNW CPICKASAAP S
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.