Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020398 | Potato | nucleus | 96.65 | 97.74 |
| KRH53246 | Soybean | nucleus | 45.25 | 44.26 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 50.84 | 43.96 |
| Bra019499.1-P | Field mustard | nucleus | 40.22 | 43.9 |
| KRH64669 | Soybean | nucleus | 49.16 | 43.56 |
| KRH16389 | Soybean | nucleus | 46.37 | 40.49 |
| KRH17980 | Soybean | nucleus | 45.81 | 40.39 |
| CDX77848 | Canola | nucleus | 43.58 | 36.79 |
| AT3G47180.1 | Thale cress | cytosol | 43.02 | 36.67 |
| CDY67192 | Canola | nucleus | 43.58 | 36.62 |
| Solyc03g026150.2.1 | Tomato | nucleus | 28.49 | 21.52 |
| Solyc11g062260.1.1 | Tomato | nucleus | 28.49 | 20.73 |
| Solyc01g087060.2.1 | Tomato | nucleus | 30.73 | 14.86 |
| Solyc09g007620.1.1 | Tomato | nucleus | 14.53 | 14.86 |
| Solyc12g019190.1.1 | Tomato | mitochondrion | 15.64 | 12.73 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 21.23 | 12.46 |
| Solyc12g019200.1.1 | Tomato | mitochondrion | 15.08 | 12.27 |
| Solyc03g118840.2.1 | Tomato | nucleus | 22.35 | 10.34 |
| Solyc02g005480.2.1 | Tomato | nucleus | 15.08 | 10.07 |
| Solyc12g014070.1.1 | Tomato | nucleus | 27.93 | 9.35 |
| Solyc08g006460.2.1 | Tomato | nucleus | 27.37 | 9.23 |
| Solyc12g096420.1.1 | Tomato | nucleus | 25.7 | 8.35 |
| Solyc09g007530.2.1 | Tomato | nucleus | 25.14 | 8.3 |
| Solyc10g007140.2.1 | Tomato | nucleus | 24.02 | 8.29 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 9.5 | 7.73 |
| Solyc12g088740.1.1 | Tomato | nucleus | 26.82 | 6.93 |
| Solyc04g078680.2.1 | Tomato | nucleus | 27.37 | 6.79 |
| Solyc01g107940.2.1 | Tomato | nucleus | 25.7 | 6.51 |
| Solyc01g107930.2.1 | Tomato | nucleus | 25.14 | 6.27 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 25.14 | 6.2 |
| Solyc07g062720.1.1 | Tomato | nucleus | 25.7 | 5.94 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K4DCD7 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF112 | SMART:SM00184 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc12g010500.1 |
| EnsemblPlants:Solyc12g010500.1.1 | UniParc:UPI0002769E62 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
No Description!
Coordinates
chr12:+:3509143..3510865
Molecular Weight (calculated)
20663.6 Da
IEP (calculated)
3.766
GRAVY (calculated)
-0.781
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDEQRKPT TRRTPLSQID EERVCIMLSM DETESESEDE EITASDEEFL DSEIQDFELE FYDDDYDDDN MEEDDVDPDE LSYEELIALG EFVGVENRGL
101: TEEEINKSLH SSTFQSNNSK TLVNKCVVCQ LEYEEGEKLV ALPCDHPYHL DCIKKWLQIK KVCPICSDEV SSTNVPKEL
101: TEEEINKSLH SSTFQSNNSK TLVNKCVVCQ LEYEEGEKLV ALPCDHPYHL DCIKKWLQIK KVCPICSDEV SSTNVPKEL
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Arabidopsis Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.